Mobile site taking over Desktop site after upload

I have an existing site hosted on a third party server.  I built a mobile site on Muse and just uploaded it via FTP.  Site worked great on mobile device but mobile took over the desktop as well.  I loaded the Muse files into the /. directory.
Thanks for the help!

Thanks Brad for the reply!   I thought that was probably the issue so I removed all of the mobile files I uploaded originally (at least I think I did.)
I uploaded my original "index.html" file from my original files and all went back normal.  I then loaded muse files via FTP to a directory on the root entitled "mobile".  Now on my phone the site will only pull up the desktop.  Isn't Muse suppose to write files to the root for device detection or am I making some mistakes here?

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