New article will not replicate to subscriber

I have a very strange problem.
I have an existing publisher/subscription, which is working perfectly. We added a new article using the SSMS 2012 GUI to the publication, ran snapshot agent, which shows it successfully generated the single article. I see the snapshot files in
the replication directory on the file system.
However, it will not create the new table on the subscriber. It does not show any errors in the logs and replication is continuing from other tables normally. I see the commands for the init of the new article in sp_browsereplcmds.
If I add a tracer token it goes in 4 seconds.
Unfortunately, this is a large Production subscription, so I would rather not reinit the entire subscription if I can help it.
Any ideas?
Publisher: Microsoft SQL Server 2012 (SP1) - 11.0.3412.0 (X64)
Subscriber: Microsoft SQL Server 2008 R2 (SP2) - 10.50.4000.0 (X64)

We just had another incident of this happen with another new article added to the same publication. This time, I did a lot more digging while it was happening and believe I found the issue.
The symptoms are: the article was added using the GUI, snapshot agent run (generated 1 article), and the article was not applied to the subscriber although replication appears to be functioning on all the original articles.
I used sp_browsereplcmds to see the commands, they are there, they are applied. However, I noticed it was issuing a "CREATE SCHEMA xxx" command. We rename the "Destination object owner" to be the name of the source
database, and "Create schemas at subscriber" was marked as "true".
This was apparently causing a CREATE SCHEMA command to be inserted into the replication commands and failing because it already exists, which caused the object to not be created and the apply snapshot to fail without error. Setting "Create
schemas at subscriber" to "False", fixed the issue and allowed the table snapshot to be applied properly.
I will try to duplicate the issue on a test server and file a connect bug if I can.

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