Other Browser Windows closing

Hello,
I am having a problem with the JRE. I am using JRE 1.3.1_04 on Windows 2000 and IE6.
If I already have browser windows open and launch my java applet from a shortcut on my desktop, IE seems to launch this new browser in the same process as the already open browser windows, and the JVM attaches itself to both browser windows. So when I do a system.exit(0) all browser windows close.
This poses a major problem for me as the users will be launching this applet from either a shortcut on thier desktop or a link from another Web application (which is set to open in a new window). In both these cases windows will open a new browser in the same process.
Any help would be greatly appreciated.

You should not use System.exit() from applets. And Sun should have not allowed you to do so. ;)
By the way:
1. I saw a checkbox somewhere in Explorer settings: "Reuse explorer windows when launching shortcuts".
2. Why not to use an applet viewer instead of IE? It will run as a separate JVM.

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