Permissions errors ...recurring or not fixed

Hi Folks,
I recently upgraded to 10.9. Overall it is working well.
But since i plan to make a clone, upgrade my drive (SSD) and clone back, i wanted to ensure all was well, so i repaired permissions.  A huge list of errors was corrected .
I restarted and checked them. Several are back -- see below:
Permissions differ on “Applications”; should be drwxrwxr-x ; they are drwxr-xr-x .Repaired “Applications”Group differs on “Library/Application Support”; should be 80; group is 0.Repaired “Library/Application Support”Warning: SUID file “System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent” has been modified and will not be repaired.
Any insight onto what's going on?  Or since i have no syptems, whistle and be happy?
Grant

According to this http://support.apple.com/kb/TS1448 there is a large number of messages you can safely ignore. So if you're not having issues it may not be a problem.

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