Picture stretched after outputting edit of Red One footage

I exported edit of Red footage to self contained Quicktime and movie looks beautiful. However, when I used Quicktime file as source in DVD Pro or Compressor, the picture is slightly stretched vertically and there is bad artifacting. I noticed that the Quicktime file frame size is 2048x1024 (2:1 aspect ratio). I used log & tranfer ProRes 422 (16:9 aspect ratio) to capture footage and same sequence settings to edit. It looked great in FCP. What the heck am I doing wrong?! Why the difference in the aspect ratios?

Actually, I have been informed that the RED whitepaper I used to guide me through the process of ingesting and editing in FCP was incorrect. They assume that everyone shoots at a 2:1 aspect ratio. My DP shot at 16:9. So, per RED instructions, I customized a ProRes 422 (HQ) codec by changing the aspect ratio to 2048x1024 (2:1 ratio)....WRONG!! If I had been more experienced, I would have questioned that spec immediately. FCP compensated by cropping the top and bottom. I didn't notice the blue guides missing at the top and bottom until someone asked me if I could see them. In short, I've solved the stretch problem. But I still have really bad artifacting in the MPEG2 files created for DVD. I'm trying to figure out why that's happening. Also, I uploaded a web version of the short film and heard ringing in the soundtrack where there was music playing. My audio in the FCP edit is at 48Mhz and the output file is 44Mhz. Could that be a problem?

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