Serious issues with software updates - please help!

A few weeks ago, I installed the 10.6.3 update (standard, not combo), and after everything was said and done, I was left with an incredibly unstable system - virtually all non-Apple software would crash on launch. I repaired my permissions, repaired the hard drive (which was fine, just a precaution), zapped the PRAM, etc. Eventually I managed to download the 10.6.3 Combo Update, applied that over my previous busto patch, rebooted, and everything worked just fine.
Until yesterday.
Last night, I installed Security Update 2010-003 - and all of those problems came back. By the time I rebooted to go into "Safe Mode," I had somewhere in the neighborhood of 220 application crashes - the only apps I found that didn't crash were Safari and Disk Utility (and Finder, Dock, and things of that nature). Repaired permissions, rebooted, and...
Kernel panic. Safe Mode yielded a different kernel panic. Anything I did other than booting from a CD caused a kernel panic. So, I restored from my last Time Machine backup, and now everything is just fine.
So - I've now had two absolutely catastrophic software updates in a row. I'm not even sure what this suggests, as my machine was completely stable and working like a dream before each of these updates - and is back in the same condition now. Does anyone have suggestions on where I should be looking to see what is wrong, or tools I could run to figure out why my computer turns into a very angry paperweight after applying patches now?

Hi C&A,
I know it may sound a lil freaky but i've done some research on this matter. It's basically a technical error in Apple's Software Updater, the connection between the internet & software disconnect or timeouts due to lack of high internet activity which is the main reason why the speed starts to decline while downloading the iTunes.
Solution. This would only work well if you've got a broadband, otherwise this can take alot of time.
*Start downloading iTunes from the updater, within 2 mins... log in to your Facebook, email, keep clicking on pages every 20-30 seconds, as this will keep the connection stable, keep doing this till the iTunes downloads completely.

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