Slow USB Ports

I've got a new 27-Inch iMac 2.66GHz Intel Core i5 with 4 GB RAM, less than a month old. I'm noticing that I'm getting slow file transfers on two (out of four) of my USB 2 ports. I've tried two different hard drives and a USB flash memory stick and the files seem to copy very slowly sometimes. Is there a known problem with the USB ports on these new iMacs or is there a way to fix this? I've tried using the other two USB ports for my backup hard drives which seems to solve the problem so I'm wondering if I don't have a couple of bad ports? The files will still copy okay to the ports in question but they are slower to copy as opposed to the ports that "work" better. I'm wondering how to tell if a USB port is actually "bad", would the file transfers work at all if this were the case or would I just get slow throughput? Is there a utility that can test the ports?
Thanks in advance.

I have noticed the exact same problem on two different iMac 27" i7's. I think it's an unfortunate result of internal devices sharing the USB host controllers.
The "fast" ports are indeed 1 & 3 (#1 being the outermost, next to the audio ports). With either of these I can read large files from an external HFS+ HDD at a steady 36MB/s, provided that only one of those ports is being used. With ports 2 & 4 (#4 being next to the firewire 800 port) I get half that rate, i.e. 18MB/s, again with nothing in the other port of the pair.
I also have a late 2008 MacBook Pro 15" with just two ports, but they are both fast at 36MB/s, even if you have something plugged into both of them. That's about as fast as you get for USB 2.0 in the real world.
My solution is to use #2 & #4 for slow devices like keyboard and mouse, and use #1 for the HDD and keep #3 empty (actually I plug my UPS into #3 since that particular device doesn't slow the HDD much, just down to 34MB/s).
*Your best bet though as always is to use FireWire 800!* I get 80 to 85MB/s on that (FireWire is just more efficient than USB 2.0, as well as being clocked faster).

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