[Solved] Broke my install (a little bit) - /usr issue?

Hi folks,
I am new to Arch Linux and until now I have had great success with configuring my system and have learnt a lot ... until I tried a little experiment to compressing my /usr folder as per these instructions http://forums.gentoo.org/viewtopic-t-646289.html. The experiment failed and I had to restore my /usr from the backup I made.
Unfortunately, now it is behaving weird. My Gnome network-manager applet no longer seems to start (despite my Daemons looking correct), I no longer have shutdown-suspend-hibernate options in my menu, only log-off (which seems to log off but logs me straight back in again) and things no longer automount (and do not even appear under "places" so it is as if they are not even recognized.
I am wondering if it is an issue with permissions that may have changed from copying the /usr folder to another drive and back? I am hoping it is a really easy issue that I have overlooked and someone will be able to recognized and help me with. Failing that, I am not sure what information would be best to help someone diagnose so please ask for whatever is necessary.
Thanks in advance,
Scott
Last edited by ScottArch (2010-02-14 12:28:16)

grey wrote:
pacman -S $(pacman -Qq)
Won't that make all packages explicitely installed?
IIRC doing a pacman -S (or even pacman -U) when you already have that package installed doesn't change whether it's recorded as a dep or explicit install.
You should probably test, though.

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