Sometimes Circles -- Sometimes Bowen Knots: Motion paths made in Illustrator

I am doing a very meticulous animation in after effects CS6. To execute this project I made all paths in illustrator CS6. Think of the shape as being the Earth, and the motion path as being Earth’s orbit around the sun. I parented the shape (the shape that will follow the motion path; Earth) with a null object, the shape parented by a null object will then be parented by another null object (the path I created in illustrator CS6, at this point I paste the shape (motion path; Earth’s orbit) into Transform: Position.
The problem:
Some motion paths go around the originally made circle, in a perfect cyclical motion. This is what I want. Some motion paths go around the four paths in a square direction, resembling the command symbol on a mac keyboard, also know as the Bowen knot. I do not want this.
My questions:
How do I make every motion path (the perfect circle I made in Illustrator) to function cohesively and dissimilar to the original circle, and not like the command symbol? Why is the conversion doing this to some, but not all shapes?
Best,
Chris

Everyone – thank you to all who responded.
A personal thank you to Rick for spending time and executing a visual explanation.
It turns out my video wasn't published originally, if you need more information click: http://www.dailymotion.com/video/x1dba60_a-letter-1_creation
To answer your questions: the Earth's orbit refrence is a simile.
I understand the process seems irrational; I being with illustrator because I’m trying to find the exact angle to the center point, in addition to the size of the circle. In other words, a circle has four points, turn the circle the correct amount of degrees and one point starts on the center point (the black dot), the other half ends on the colored dot. The only way I know how to do that is by using a plug-in with illustrator (to get the angle from the colored dot to the center point, and the size of the circle), an analog of this plug-in is not offered in after effects.
My original question: why when I paste the circles (that are already made in illustrator) into the null: position in after effects, some give me a perfect circle, some give me a Bowen knot? I appreciate the suggestions about only in after effects, unfortunately the circle paths were already made in illustrator.
Best,
Chris

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Sometimes Circles -- Sometimes Bowen Knots: Motion paths made in Illustrator

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