Sorry to bother --- System Temperature...

Hi! First post for me, here.... I know that this problem has been "overdiscussed" but I'd like to report my experience and hear your opinions. So please, don't blame me... 
I'm talking about the "system Temperature" readings on K8N Neo2 Platinum board. I've read many complains about temperature sensors on this mobo.
Topic reference:
https://forum-en.msi.com/index.php?topic=77365.0
I'm watercooling for the first time. Got everything installed 'till seen strange temperatures readings. So I put outside of the case the mainboard with CPU and Chipset waterblocks attached. My videocard is a Leadtek 6800GT and it gets pretty hot: I've excluded it from my test thinking was the cause of the chipset overheating problem and replaced with an Asus Geforce2 card.
The temperatures are checked only in BIOS (modded v1.8Rev.3)
Ambient temperature is about 28°C.
While CPU temperature keeps around 30-34°C, the "system temperature" goes up around 50°C. I put some little heatsinks over the hot mosfets (40°C) near EIDE ports and on the chip on the right of the motherboard chipset without luck.
Then I put a fan on the winbond chip and seen the temperature drop till 30°C. Checking with an external digital sensor confirm this result.
So my question is: "System temperature" = "Winbond chip" temperature? 
Considering that the chipset (with its waterblock) is barely warm, how could Winbond chip accurately report mainboard/chipset temperature if it's the primary cause of heating?
Secondly, without aircooling, Winbond chip keeps a very long time to go back to high temperatures and, however, it never gets 50°C. Now it's 37-40 °C. This is a very strange behaviour, don't you think? 
Please tell me if I'm wrong.
Hope to hear your opinions...
Thank you very much,
Zazza

Hi Supershanks!
Thanks for the answer...
Now I've looked at that thread:
https://forum-en.msi.com/index.php?topic=80972.msg573377#msg573377
but I can't see why if I aircool the Winbond chip, system temperature goes down to 30-35°C... 
Hope to hear Syar2003 thoughts about.
Zazza

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