Storage Spaces - volume with deduplication always flagged as "online filesystem check needed"

Hi,
I am using Storage Pools and we have quite some Volumes on them. 
I am noticing an warning to do an online check of a Volume on 2 volumes where dedup is activated. 
If I do the check, all is fine for about 10-30 minutes, and it's flagged again to be checked. It never sais it needs any repair. 
The odd thing is, other volumes without DEDUP don't show this behaviour. 
What could cause this error?
- Disk Space is enough available. 
- Logs don't tell a lot. We have quite some entries with low disc space, but as there are volumes with DPM on this machine, it's referencing DPM Volumes with low disc space warnings. (Info - no DEDUP activated on DPM Volumes as it's not supported). 
So basically why are deduped volumes (successful deduped with over 40 %), always in a state that needs a check?
Thanks
Patrick

I have the same problem. 
In upgrading the storage pool from 2012 to 2012 R2 (new installation). 
It looks good 
Try a variety of methods, the last one is garbage collection. 
I looked inside tips Best Practices Analyzer does not clean up the garbage, so try. 
PS script (requires administrator privileges)
Get-Volume
#Replace the letter H
repair-volume -DriveLetter H -Scan
#Replace the letter H
Start-DedupJob H: –Type GarbageCollection -full -Memory 50
Get-DedupJob
G yc {Son of VB.NET}

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    Interleave = 262144
    IsDeduplicationEnabled = False
    IsEnclosureAware = False
    IsManualAttach = True
    IsSnapshot = False
    LogicalSectorSize = 512
    Name =
    NameFormat =
    NumberOfAvailableCopies =
    NumberOfColumns = 1
    NumberOfDataCopies = 2
    OperationalStatus = Detached
    OtherOperationalStatusDescription =
    OtherUsageDescription =
    ParityLayout = Unknown
    PhysicalDiskRedundancy = 1
    PhysicalSectorSize = 4096
    ProvisioningType = Thin
    RequestNoSinglePointOfFailure = False
    ResiliencySettingName = Mirror
    Size = 161061273600
    UniqueIdFormat = Vendor Specific
    UniqueIdFormatDescription =
    Usage = Other
    WriteCacheSize = 0
    PSComputerName =
    PS C:\corefig> get-virtualdisk -friendlyname 'Videos' |FC
    class CimInstance#ROOT/Microsoft/Windows/Storage/MSFT_VirtualDisk
    ObjectId = {1}\\HV001\root/Microsoft/Windows/Storage/Providers_v2\SPACES_Virt
    ualDisk.ObjectId="{9542513c-a0d4-11e3-8123-806e6f6e6963}:VD:{3debf056-01f1-11
    e3-b1d6-001fbc081884}{7e2225bc-0cf6-11e3-b1db-001fbc081884}"
    PassThroughClass =
    PassThroughIds =
    PassThroughNamespace =
    PassThroughServer =
    UniqueId = BC25227EF60CE311B1DB001FBC081884
    Access = Read/Write
    AllocatedSize = 223606734848
    DetachedReason = Incomplete
    FootprintOnPool = 447213469696
    FriendlyName = Videos
    HealthStatus = Unhealthy
    Interleave = 262144
    IsDeduplicationEnabled = False
    IsEnclosureAware = False
    IsManualAttach = False
    IsSnapshot = False
    LogicalSectorSize = 512
    Name =
    NameFormat =
    NumberOfAvailableCopies =
    NumberOfColumns = 1
    NumberOfDataCopies = 2
    OperationalStatus = Detached
    OtherOperationalStatusDescription =
    OtherUsageDescription =
    ParityLayout = Unknown
    PhysicalDiskRedundancy = 1
    PhysicalSectorSize = 4096
    ProvisioningType = Thin
    RequestNoSinglePointOfFailure = False
    ResiliencySettingName = Mirror
    Size = 1759325978624
    UniqueIdFormat = Vendor Specific
    UniqueIdFormatDescription =
    Usage = Other
    WriteCacheSize = 0
    PSComputerName =

    Hi omon_77,
    You can first refer the following step by step third party article and KB:
    Replace Failed Disks and Repair JBODs for Storage Spaces in Windows Server
    https://technet.microsoft.com/en-us/library/dn782852.aspx?f=255&MSPPError=-2147217396
    Replacing a failed disk in Windows Server 2012 Storage Spaces with PowerShell
    https://www.hodgkins.net.au/storage/replace-failed-disk-in-storage-spaces-pool-with-powershell/
    Step By Step: How to Replace Faulty Disk In Two-Way Mirrored Storage Tiered Space
    http://charbelnemnom.com/2014/09/step-by-step-how-to-replace-faulty-disk-in-two-way-mirrored-storage-tiered-space-storagespaces-ws2012r2/
    More information:
    Storage Spaces - Designing for Performance
    http://social.technet.microsoft.com/wiki/contents/articles/15200.storage-spaces-designing-for-performance.aspx
    Storage Spaces Overview
    http://technet.microsoft.com/en-us/library/hh831739.aspx
    Windows Server Storage Spaces: What is it and why should I use it?
    http://curah.microsoft.com/5049/windows-server-2012-r2-storage-spaces-what-is-it-and-why-should-i-use-it
    I’m glad to be of help to you!
    Please remember to mark the replies as answers if they help and unmark them if they provide no help. If you have feedback for TechNet Support, contact [email protected]

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