"Unable to parse the opf file" of my book, what to do?

We have created a neat little eBook with iBooks Author, following all the specifications, keeping an eye on memory limits, etc., and using some of the widgets, but we are getting an error message when we try to submit the book through iTunes Producer, so we can't cross the finish line (after which there is a beer waiting, but not yet.)
This eBook process has taken us about one year to complete.
This is the error message that appears on the system: "Error ITMS-9000 'Unable to parse opf file container.xml' at Book.
I know a little bit about EPUBs, and I know this is not a playground-variety error message. So I need help.
There are a few threads out there that address this issue (but not really, more like people drowning and crying "help" while the sea whirl drags them down to the depths).
Here is the issue: Our file is not a standard EPUB file that you can whip up with Sigil, and then mess with the manifest; it is a fully loaded peacock authored and designed with iBooks Author, complete with sound files, widgets, etc. Hence my worry.
Any suggestions so that I can sleep tonight? They would be much appreciated.

Yep, i just did it again. The entire scroll-bar widget, complete with formatted text, graphics, etc., pasted itself nicely in another book. Two different files, the same widget.
I use the scroll-bar widgets for most of my texts. (I have audio buttons on the side, and the scripts are within the widget, to the side). My only text is within widgets, and text boxes, naturally. 
I am following your recommendation: cleaning files, etc. I am remaking the book anew. I need to convince the EPUB bot or whatever that my file looks and works nicely on all my devices. You would expect an error message when previewing the book: 'Hey Amigo, your file is flawed, stop working on it, and get back to the drawing board." Should be able to try again next Monday.

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