What to do about iTunes files constantly disappearing?

Often, and more and more recently, when I go to my iTunes folders to burn a CD one of more
selections in the playlist are suddently "lost" (I'm a performer and a composer, and I often make CDs of my own works for demo). These are from Sibelius files, that I have to convert into AIFC format with a program named WireTap Pro, because Sibelius files are not properly formatted to convert directly into iTunes. (Does anyone know of a better way to do this than WireTap Pro?) Today I want to burn a couple of CDs and the first playlist contains 4 of 17 numbers that are somehow "lost" in the program. The only way to get them back in is to convert the Sibelius files once again to AIFC and then drop that icon into iTunes. This has often happened and now more and more.
Perhaps related: when the WireTap file is created, Quicktime opens although I DO NOT WANT THAT
TO HAPPEN! I think I've done everything in Quicktime preferences to prevent the program from
opening when I insert a CD, for instance, but these files are created within my G4, so the goddam
Quicktime keeps opening. As well, these AIFC files take up LOTS of space, so when I have dropped
them into iTunes I take the desktop icons to the trash.
SHOULD I NAME THESE FILES SOMETHING OTHER THAN .aifc WHEN THEY APPEAR ON THE DESKTOP?
Maybe that's what I'm doing wrong. Thanks, James Johnson in Plattsburgh NY (big snowstorm today)

Are the files truly lost or just that iTunes has lost track of them? I occasionally find iTunes has lost track of a file but I can use Spotlight to find it again (if it isn't in some logical location since I don't have iTunes automatically consolidate my music). If the tracks are misplaced you can re-associate them when iTunes asks you if you wish to do this when trying to play a track. If files are randomly disappearing from your computer you have bigger issues than iTunes not finding something!

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