WinSCP not being executed when package is ran from job

I have a package in the SSIS catalog. It worked fine when it ran in the file system, but like so many others, died when I called it from a job. I ran the problem down to the fact that the account that the job was running under didn't have access to the directories
that the package was trying to access. That solved half my problem.
In my package I'm calling WinSCP from a script task. I can tell the executable is not getting called. No errors are being thrown. I gave the account in question full access to the folder where WinSCP resides but that didn't fix the issue. What else do I
need to look at?

Arthur, WinSCP has logging functionality. When the executable gets called a log file is created. No log file is being created. I did pull that particular piece of functionality out of the package and unit tested it and it worked fine which has only caused
me further frustration.
I am currently getting this series of errors which I only just found:
The expression for the variable "InitialDirectoryFullPath" failed evaluation. There was an error in the expression.
The variable "User:RootFileDirectory" was not found in the variables collection.
Attempt to parse the expression "@[User:RootFileDirectory] + @[InitalDirectory]" failed and returned error code 0xC00470A6. The expression cannot be parsed.
This makes no sense as it runs just fine in other environments under other accounts. Only when I push this thing to a certain box does it fail like this. RootFileDirectory is being populated by a Windows Environment Variable and I thought the problem was
there except there are other parts of the package that use that variable and they work just fine.

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