Every File I export in AE has a blue/purple saturation overlay on it????

I just started using AE and only for twixtor, i thought my problem was in the twitor exporting that my kayak (in the video shot) turned purple after the render (originally red) amonst other colour distortions.  I literally dragged the .mov / .mp4 /.MTS (i tried them all) right into the timeline and hit Export.  Still has the weird saturation problem.  I have AE CS4 with a Vista operating system, my computer knowledge is below average and would love to get this problem sorted out.
thanks!

First, make sure that AE is uptodate by running the updater.
Then try this. Open After Effects. Import a video clip. Drag the video clip to the new composition icon at the bottom of the Project Panel. I don't remember if you can drag footage into an empty timeline and create a comp in CS4.
Now add the comp to the render cue and render a test.
If this still doesn't work let us know.
Transcodeing is the process of rendering footage to a production codec. You would use Premiere Pro, another NLE, or even QuickTime Pro to do this. Now you've got a video that has every frame as a unique set of pixels instead of a real frame and then a group of frames that are mathematically calculated from the real frames before and after the group. That's how mpeg compression works. A few real frames, a bunch of frames made up of guestimated data.

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