Acrobat Pro 9 & iPad pdf reader issues

When I create/edit a pdf in Acrobat 5 and then send to my iPad, the pdf will be complete and correct.  When I create/edit the same pdf in Acrobat 9 Pro and send it to my iPad the pdf will be missing any data that I edited and the other text will be garbled.  This occurs when using both iBooks and Pdf Pro Reader by iTech Development to view the pdf file.  Is this an issue with Acrobat or with the pdf readers?  What is done differently in Acrobat 9 that might cause these readers to have issues?

So, it is definitely an embedded fonts issue.  But I'm still rather
confused with solving the issue.  When I use Acrobat 5 on this pdf, it
embeds a substitute font of Times New Roman for the Times Roman font, but when I use Acrobat 9 it is using some substitute font that is getting garbled in the iPad.  I am still playing and testing, but any additional ideas would be greatful.
I also talked to the developer of the PDF Pro Reader and they opened an issue with Apple regarding the fonts being garbled and also let me know that if I open the pdf on a Mac and save it it will look fine on the iPad.  This did work, but is not something I can use as a solution, since we do not have a Mac and are not looking to purchase one just to solve this issue.

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