Adding/upgrading within the OSX file structure?

I want to upgrade my Dev environment, which happens to be my laptop...
The MySQL that comes with 10.4 is 4.0.21 based out of /Library/MySQL/
Apache 1.3.33 is run by /usr/sbin/httpd with config files in /etc/httpd/.
Has anyone ever tried upgrading these to these locations, as opposed to using /usr/local/? Any problems with port conflicts?
php 4.4.7 is in /usr/bin/, with supporting files and libraries... somewhere. How might I add php5 so that it is also centered out /usr/bin/? I need to be able to go back and forth.
Any ideas? Is /usr/local actually easier, in the long run?
Thanks!
David

I've always looked at this as a question of "ownership"; of preserving continued stability. Save for specific sorts of configuration and installation and related activities, dropping random stuff in the system-owned directories or deleting random stuff or otherwise messing about within the Apple directories always seemed somewhat hazardous (to me), and seemed that it could lead to immediate trouble and (worse) trouble sometime in the future.
We've all seen a few folks posting in various of the discussion forums that have gotten into trouble by deleting stuff. What's more subtle is what happens when upgrades wander by and encounter end-user changes.
(I did OS-level engineering development for another vendor for quite some years, FWIW. Unexpected changes made to the system directories by end-users or by various products could -- and variously did -- break upgrades, and could break dependencies within various products.)
If you're looking for newer bits than you have, Darwinports might be an option. "Might" being the key word here. Sometimes Darwinports has some pretty old stuff. When last I looked, the Darwinports bits were using /usr/local. That's certainly where I have my php5 bits configured.
Locally, /usr/local is used. What and how you choose with your system-related directories is up to you, of course.

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