Auto sync my iPod -a little help, please?

Hi,
Just got a 60gb 5th gen iPod a month ago, and enjoying it very much -BUT... I'm still trying to decode iTunes, to figure out how it works, because in my humble opinion, it *****!
I spent quite a lot of time converting videos, so they would be playable on the iPod, and, running out of disc space, subsequently deleted the files from my harddisk. Didn't think this would be a problem, as I'd cpoied them to the iPod.
BUT.. then I had some trouble with the number of songs in the iTunes library not matching the number of songs on the iPod, and instead of comparing more than 8000 songs, I thought, why not use the "only sync checked items" option?
So I checked that one, and unchecked the sync movies, tv-shows, podcasts etc. and clicked Apply. And the iPod updated -for quite some time. And when I got up next morning, ALL MY VIDEOS WHERE GONE!!!
Now, HOW can that happen?? When set to only update checked items, and with ONLY a check mark in Music, WHY does it sync the videos as well? I full well knew, that if it sync'd the videos (which weren't on my comp anymore) they would dissappear from the iPod, so of course I didn't want to sync them. So why does iTunes sync content that is un-checked? And can anyone tell me how to do it properly, because I'll have to do it all over again, and manually just ain't as good.
Regards,
Jakob

Anyone?

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