Bad File Permissions, Locked Files, Applications and Drives

I've been running in to a huge problem the last few days and I can't find a solution short of a complete archive and reinstall. The problem started with photoshop CS3; I couldn't open the application because it said that it was locked and to go into the 'get info' panel and change it. Well, it's not locked and nothing I did could change that. Shortly after this, I started getting folders and files that would keep changing their permissions so I wouldn't have access to them any more. I kept getting the "Unknown" user in the 'Get Info' panel of these files and folders. While trying to find a solution to that, I could no longer add files to the Trash without immediately emptying it. I tried the steps from this post but nothing worked:
http://discussions.apple.com/thread.jspa?threadID=1216618&tstart=0
After trying all this, All of my drives except my Main Boot Drive locked itself and I can't figure out what's going on. I have never had this many problems happen in the 12+ years of owning a Mac. could someone please help me.

I went back to 10.4.11. Right before the upgrade to 10.5 I bought a new hard drive and cloned my old system to it and then upgraded. When my machine became completely unusable, I was able to just through in my old drive. I didn't loose that much, but it's still frustrating. I'm still dealing with all my external drives being Locked or the permissions are so messed up that it might as well be locked. I'm gonna be waiting for 10.5.4 before I even think of upgrading again. Worst system upgrade I've EVER had to do.

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