Best format for future AppleTV use?

I have EyeTV 200 and I've recorded some TV shows. I've recorded them as MPEG-4 standard. If I export them to QuickTime H.264, yielding the smallest file, will I be able to view them with AppleTV once I buy one in the future? Or should I export them with the AppleTV setting which give bigger files? Thanks.

i have ipod preset .m4v that do play on Apple TV. The resolution of all my .m4v for the ipod was 640x480 or slightly smaller on some. They look ok but not great on a plasma 42 inch TV. My son did not like the slightly stretched heads.
So now I'm using mpeg H264 ate 854x480 ie Apple TV preset but not HD because I don't have any HD video files...yet. these look just like or slightly better as if you werewatching a DVD movie. The downside is the file size.
ipod .m4v file size was avr 1.3 gigs and Apple TV non-HD avr size is 4.7 gigs. 500 gig hard drive is not going to be big enough in the long run.

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