Best sequence settings for editing HD video material from Nikon D3S

Hello there,
My quesstion is, what are the best settings in FCP for editing material from the Nikon D3S?
At this point I had a sequence (automatically generated from FCP) with settings
Frame Size: 1440X1080 Aspect Ratio (1440X1080) (16:9)
Pixel Aspect Ratio: HD 1440 X 1080
Field Dominance Upper (Odd)
Editing Timebase: 25
QuickTime Video Settings
Compressor: HDV 1080i50
Now, when I place a video clip form the D3S into the timeline, in the preview screen it does not fill the frame. I have to grab the corners and pull it to fill the gaps.
I opened the same video clip in QT to check on the inspector and this is what is telling me:
Apple OpenDML JPEG, 1280 X 720
FPS: 24
Normal size: 1280X 720
Current size: 1280 X 720 (Actual)
What do I need to do, so that the sequence settings are very similar to my AVI files? Or to make the same? I assume that if I pull the corners to fill the frame, I am loosing quality? Is that the case?
Since I need to deliver this today I will continue working on the sequence as with the former settings, but I am wondering that if I have to change the settings, will this affect my already edited material? Do I then need to start a new sequence from scratch?
Sorry, I guess too many questions, but they all lead to the same thing
Thanks a lot!
Emil

I have a D3s. I'm using FCP7, it's been awhile since I used version 5 so all I can do is let you know my workflow with ver.7 If you convert to ProRes 422 1080x720 24fps, it works very well, change the audio from 44 to 48kHz and set the frame rate to 24 instead of 23.98
Here's what I do.
1. Copy the CF card to the HD of the computer
2. Open Compressor, in these next steps we'll make a custom Droplet.
a. In the Settings tab, select Formats > Quick Time > Apple ProRes 422
b. Drag this to "Drag Settings & Destinations Here" and click it
c. In the Inspector, select Encoder
d. Select Video Enabled, then hit Settings. Frame rate 24 > OK
e. Select Audio Enabled, then hit Settings. Choose 48 kHz
f. Save As. Name it. It will be in > Settings tab > Custom
g. Click your new Cutom setting
h. File > Create Droplet
i. select your new custom setting
j. save it to the desktop, leave destination as source.
3. open the Droplet,
4. drag all you D3s clips in, change destination to a new folder
Now you have all your original .DVI and the converted ProRes clips
5. Open FCP, select Final Cut Pro > Audio/Video Settings
6. in the Sequence Setting tab select Apple ProRes 422 1280x720 48kHz
7. Clip Duplicate and give it a new name
8. change the Editing Timebase to 24 > OK
9. select the summary tab click Create Easy Setup
10. name it, give it a description > Create
11. the next time your open FCP use this Easy Setup
12. your D3s clip should not need rendered now.
13. When your done editing use Send to Compressor
14. Vimeo will accept a wide varity of formats
15. I use Quicktime H.264 with settings set to best
16. For Blu-ray I use Export to QT Movie and use Sony DVD Architect to author the BD at 35 mbps, but that's another story.

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