Can't upgrade because of Node.js conflicts?

Hey all,
I just started messing around with Node... so I'm not really sure what to do here. Tried to run a
pacman -Syu
today and got this:
error: failed to commit transaction (conflicting files)
nodejs: /usr/lib/node_modules/npm/node_modules/fstream-npm/LICENSE exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/github-url-from-git/LICENSE exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/minimatch/.travis.yml exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/bin/cmd.js exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/bin/usage.txt exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/node_modules/minimist/.travis.yml exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/node_modules/minimist/LICENSE exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/node_modules/minimist/example/parse.js exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/node_modules/minimist/index.js exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/node_modules/minimist/package.json exists in filesystem
nodejs: /usr/lib/node_modules/npm/node_modules/mkdirp/node_modules/minimist/readme.markdown exists in filesystem
Errors occurred, no packages were upgraded.
What should I do? Delete all those files?
Last edited by joetemp (2014-08-30 21:02:55)

Better install npm manually, so it's complete independent of pacman:
download binarys: http://nodejs.org/download/
extract e.g.:
~/bin #a bin in your personal home for example
create a link
ln -s node-v0.10.26-linux-x64 node
add dir bin to PATH
export PATH=$HOME/bin/node/bin:$PATH
set npm config parameter with: npm config set <key> <value>:
npm config set root /home/wwn/bin/node/lib/node_modules
npm config set binroot /home/wwn/bin/node/bin
npm config set manroot /home/wwn/bin/node/share/man
check
cat ~/.npmrc
look at your conf
npm config ls
~./npmrc example
root = /home/wwn/bin/node/lib/node_modules
binroot = /home/wwn/bin/node/bin
manroot = /home/wwn/bin/node/share/man
check installation
node --version && npm -version && which npm # should lead to /home/<user>/bin/
Last edited by wwn (2014-09-01 08:07:15)

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Good day
I haven't upgraded one of my machines for quite some time, probably a year or more.
I tried upgrading and got a file conflict problem. Here are the commands and output -
[ben@Desktop ~]$ sudo pacman -Suy
:: Synchronizing package databases...
core is up to date
extra is up to date
community is up to date
archlinuxfr is up to date
:: The following packages should be upgraded first :
pacman
:: Do you want to cancel the current operation
:: and upgrade these packages now? [Y/n]
resolving dependencies...
warning: dependency cycle detected:
warning: udev will be installed before its util-linux dependency
looking for inter-conflicts...
:: kmod and module-init-tools are in conflict. Remove module-init-tools? [y/N] y
:: gnupg and gnupg2 are in conflict. Remove gnupg2? [y/N] y
Targets (57): acl-2.2.51-1 attr-2.4.46-1 bash-4.2.024-2 bzip2-1.0.6-3 ca-certificates-20120212-1 coreutils-8.16-2 cracklib-2.8.18-2 curl-7.25.0-1
db-5.3.15-1 dirmngr-1.1.0-3 e2fsprogs-1.42.1-1 expat-2.1.0-1 findutils-4.4.2-4 gawk-4.0.1-1 gcc-libs-4.7.0-3 gdbm-1.10-1
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libassuan-2.0.3-1 libcap-2.22-2 libffi-3.0.10-1 libgcrypt-1.5.0-1 libgpg-error-1.10-1 libgssglue-0.3-1 libksba-1.2.0-1 libldap-2.4.30-1
libsasl-2.1.23-9 libssh2-1.4.0-1 libtirpc-0.2.2-2 libusb-1.0.8-2 linux-api-headers-3.3-1 module-init-tools-3.12-2 [removal]
ncurses-5.9-3 openssl-1.0.1-2 pacman-mirrorlist-20120211-1 pam-1.1.5-2 pciutils-3.1.9-1 pcre-8.30-1 perl-5.14.2-7 pinentry-0.8.1-3
pth-2.0.7-4 readline-6.2.002-1 run-parts-4.2.1-1 sed-4.2.1-4 tzdata-2012c-1 udev-181-9 usbutils-005-1 util-linux-2.21.1-2 xz-5.0.3-2
zlib-1.2.6-1 pacman-4.0.2-1
Total Installed Size: 211.99 MiB
Net Upgrade Size: -1.38 MiB
Proceed with installation? [Y/n] y
(55/55) checking package integrity [#######################################################] 100%
(55/55) loading package files [#######################################################] 100%
(55/55) checking for file conflicts [#######################################################] 100%
error: failed to commit transaction (conflicting files)
util-linux: /bin/mountpoint exists in filesystem
util-linux: /usr/share/man/man1/mountpoint.1.gz exists in filesystem
Errors occurred, no packages were upgraded.
[ben@Desktop ~]$ pacman -Qo /bin/mountpoint
/bin/mountpoint is owned by sysvinit 2.88-2
[ben@Desktop ~]$ pacman -Qo /usr/share/man/man1/mountpoint.1.gz
/usr/share/man/man1/mountpoint.1.gz is owned by sysvinit 2.88-2
I did the pacman -Qo based on this sticky -
https://bbs.archlinux.org/viewtopic.php?id=130138
I would appreciate some help on what to do now.
Thanks
belbo
Last edited by belbo (2012-04-08 13:55:39)

jgreen1tc wrote:Try googling what happened with the packages in conflict (kmod/module-init-tools and gnupg/gnupg2) and you should find what you need.
That's not the problem [1] - this is:
error: failed to commit transaction (conflicting files)
util-linux: /bin/mountpoint exists in filesystem
util-linux: /usr/share/man/man1/mountpoint.1.gz exists in filesystem
Errors occurred, no packages were upgraded.
https://projects.archlinux.org/svntogit … e35cf4d2ce
Try 'pacman -Syu sysvinit'. Not sure why pacman doesn't list sysvinit as a package that needs to be updated. sysvinit 2.88-3 is in the repos since September and you're still using the previous version.
[1]
* http://www.archlinux.org/news/kmod-repl … nit-tools/
* gnupg thing is just a regular replacement.
Last edited by karol (2012-04-08 14:41:05)

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:: Synchronising package databases...
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Last edited by kyentei (2014-07-13 21:33:57)

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I have also tried lxdm:
** Message: find greeter (nil)
** Message: find idle (nil)
** Message: 1405266069: add xserver watch
X.Org X Server 1.15.2
Release Date: 2014-06-27
X Protocol Version 11, Revision 0
Build Operating System: Linux 3.15.1-1-ARCH x86_64
Current Operating System: Linux mantra 3.14.12-1-lts #1 SMP Wed Jul 9 20:54:12 CEST 2014 x86_64
Kernel command line: BOOT_IMAGE=/boot/vmlinuz-linux-lts root=UUID=42671ea6-5658-4253-8959-835bdf16ba7a rw quiet
Build Date: 27 June 2014 07:32:26PM
Current version of pixman: 0.32.6
Before reporting problems, check [url]http://wiki.x.org[/url]
to make sure that you have the latest version.
Markers: (--) probed, (**) from config file, (==) default setting,
(++) from command line, (!!) notice, (II) informational,
(WW) warning, (EE) error, (NI) not implemented, (??) unknown.
(==) Log file: "/var/log/Xorg.0.log", Time: Sun Jul 13 17:41:09 2014
(==) Using config file: "/etc/X11/xorg.conf"
(==) Using config directory: "/etc/X11/xorg.conf.d"
Initializing built-in extension Generic Event Extension
Initializing built-in extension SHAPE
Initializing built-in extension MIT-SHM
Initializing built-in extension XInputExtension
Initializing built-in extension XTEST
Initializing built-in extension BIG-REQUESTS
Initializing built-in extension SYNC
Initializing built-in extension XKEYBOARD
Initializing built-in extension XC-MISC
Initializing built-in extension SECURITY
Initializing built-in extension XINERAMA
Initializing built-in extension XFIXES
Initializing built-in extension RENDER
Initializing built-in extension RANDR
Initializing built-in extension COMPOSITE
Initializing built-in extension DAMAGE
Initializing built-in extension MIT-SCREEN-SAVER
Initializing built-in extension DOUBLE-BUFFER
Initializing built-in extension RECORD
Initializing built-in extension DPMS
Initializing built-in extension Present
Initializing built-in extension DRI3
Initializing built-in extension X-Resource
Initializing built-in extension XVideo
Initializing built-in extension XVideo-MotionCompensation
Initializing built-in extension XFree86-VidModeExtension
Initializing built-in extension XFree86-DGA
Initializing built-in extension XFree86-DRI
Initializing built-in extension DRI2
Loading extension GLX
Loading extension NV-GLX
Loading extension NV-CONTROL
Loading extension XINERAMA
The XKEYBOARD keymap compiler (xkbcomp) reports:
> Warning: Symbol map for key <RALT> redefined
> Using last definition for conflicting fields
> Warning: Type "ONE_LEVEL" has 1 levels, but <RALT> has 2 symbols
> Ignoring extra symbols
Errors from xkbcomp are not fatal to the X server
** Message: 1405266069: start xserver in 1 retry
** Message: add 0xdd8e20
** Message: prepare greeter on :0
** Message: start greeter on :0
/usr/lib/lxdm/lxdm-greeter-gtk: error while loading shared libraries: libGL.so.1: cannot open shared object file: No such file or directory
I am using the LTS kernel. I had this same issue on my laptop yesterday. On there, I fixed it by moving to the LTS kernel (at least until a new non-lts kernel comes available).
EDIT: Nevermind. I fixed it by reinstalling nvidia-libgl and lib32-nvidia-libgl. Display Manager now works!
Last edited by kyentei (2014-07-13 21:33:34)

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Vladimir

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[sudo] password for sarai:
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extra 1424.6 KiB 846K/s 00:02 [######################] 100%
community 1777.4 KiB 998K/s 00:02 [######################] 100%
multilib 90.8 KiB 187K/s 00:00 [######################] 100%
:: Starting full system upgrade...
:: Replace python-egenix-mx-base with extra/python2-egenix-mx-base? [Y/n] y
:: Replace python-logilab-astng with extra/python2-logilab-astng? [Y/n] y
:: Replace python-logilab-common with extra/python2-logilab-common? [Y/n] y
resolving dependencies...
looking for inter-conflicts...
warning: removing 'libgl' from target list because it conflicts with 'nvidia-utils'
error: failed to prepare transaction (could not satisfy dependencies)
:: nouveau-dri: requires libgl=9.0
A little bit aggravating, it kindly removes libgl from the list because of a conflict then fails out because it's required.
I used nouveau as my graphics driver for a year or two when I first set up this system, but it started giving me weird slowdowns and errors so I tried switching to the proprietary drivers (I know, shame shame) which fixed it. I'm not surprised that they're not compatible, but when I tried to figure out how to remove nouveau I see that it is built into the kernel? I followed the directions as explicitly as possible when installing nvidia so I'm not sure where I went wrong.
Right now, I can't upgrade and I would really like to avoid the pitfall of just blacklisting nouveau-dri. I'd rather invest the work into actually fixing the problem.
I would appreciate any advice.
Last edited by Sarai (2012-11-01 23:07:44)

karol wrote:
IIRC since version 1.0.2-2 xf86-video-nouveau depends on nouveau-dri which in turn depends on libgl which conflicts with nvidia because Nvidia provides their own libgl implementation.
This might help: https://wiki.archlinux.org/index.php/Nv … au_drivers
Thank you, that was quite helpful. The script to switch from nouveau to nvidia includes the line to remove the packages libgl, nouveau-dri, and xf86-video-nouveau. I tried running just that line and it failed out because nouveau-dri and libgl aren't actually installed. How irritating! However, I was able to remove xf86-video-nouveau, and after that pacman has gotten past the dependency check and is installing packages so I think this is fixed.
Big kudos for all the help, marking this solved.

I am trying to upgrade to yosemite (for imac) from version 10.6.8 but even though i have 70gb available on my hard drive it wont let me upgrade because it says i dont have enough memory!! what can i do??

i am trying to upgrade to yosemite (for imac) from version 10.6.8 but even though i have 70gb available on my hard drive it wont let me upgrade because it says i dont have enough memory!! what can i do??

Install more RAM in the computer; the Mac needs to have at least 2GB of RAM and should have 4GB or more first.
(125734)

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