Cross-References Broken In RoboHelp 10 Output

We are using FrameMaker 11 to author our documentation. We have some cross-reference links that do not work when the FrameMaker book is imported into RoboHelp. Upon import, the href information is not included in the link in the HTML code. The text looks like a link, however. When the help is generated, the text is not a link.  The following is an example of a non-functioning link:
see <a>Link</a>.</p>
Here is an example of a cross-reference that is functioning correctly:
<a href="#XREF_90399_Heading_Text">Link</a>
There are no errors in FrameMaker. The cross-reference is updating correctly in FrameMaker. In addition, when a PDF is made form the same book, the cross-reference works in the PDF.
Troubleshooting steps I have taken:
I have tried going to MIF and back for both the source and target documents.
I have recreated the cross-reference and marker.
I have tried linking to a heading cross-reference marker, as well as a manually create cross-reference marker.
I have renamed the file.
I have renamed the marker.
I have used different cross-reference formats.
I recreated the file by copying all the text to Notepad and pasting the text back into a fresh FrameMaker file.
None of the steps I have attempted have corrected the issue for the cross-reference I focused my troubleshooting on. I hope that someone can point me in the right direction to correct this issue.

I have been trying everything I can think of to move the files around to resolve the issue. 35 characters is very disappointing. Is this for the file and cross reference or the whole file path? I am not sure how you are going to be able to link from one Framemaker file to another, including a cross-reference name (especially when you can use heading for the cross-reference name) with a limitation like this.  We also have a large library with many directories. We utilize single sourcing, so some files are in completely other directories from the file that is cross-referencing to it. From what you are telling me, it sounds like we no longer have the ability to use cross-references from one file to another in our library structure. Are you saying that all cross references basically need to be in the same file to allow cross references to work properly in RoboHelp? We moved from a WebWorks solution and we never had any issues with our links.
What I don't understand is the marker is in the destination file in the converted RoboHelp files, but the link is completely missing the <a href="#XREF_name ofmarker"> code in the cross-reference link. When I go in and manually link the cross-reference in RoboHelp, it works. This seems like a bug. I think having a 35 character limit on a filepath, filename, and cross-reference name is not going to work for anyone that has any sort of complex directory structure with multiple authors, sharing content and since it isn't a limitation of HTML, I don't see why this functions this way. Manually linking isn’t a reasonable option for us. We have a publishing system that publishes all of our output. We have hundreds of files that are generated automatically.

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       7. Take bytes from UNpredicted rows, and in this case
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       2nd byte    
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  • Cross Reference Sources appearing in Story Editor view but not appearing in the Cross Ref pane

    I have imported a Word document containing working cross references into an InDesign document. The vast majority of these cross references import correctly and link to their destinations within the document, however there are some that are not working. If I view the text frame in the story editor view, I can see these "broken" cross reference sources that came in from the Word doc but on selecting them I can see that there isnt a corresponding entry for it in the cross reference pane. As said, there are only a few that are behaving like this.
    What could be causing these not to appear in the cross reference pane?
    Obviously as they are not appearing in the list of cross references I can't update them, and also, as they are technically broken cross references, because a source exists for them but there is no corresponding entry in the pane, then on export to epub, InDesign crashes (If there is one broken cross reference in a document, export to Epub will crash indesign).
    Also, to clarify, in the Word doc if I navigate to a cross reference that is failing once in InDesign, I can update it properly, and also navigate to its destination in the Word doc, so it's not as though these cross references are broken before coming into InDesign. Also I believe the destinations for these "broken" cross references are coming across properly to indesign too as I can see them in the story editor view.
    Supposed Cross Reference source selected in Story Editor view on left, but no corresponding cross reference highlighted in pane on right:
    Technical Details:
    InDesign CS5.5 - Version 7.5.3
    Microsoft Word 2010, File type .docx

    I have found the possible cause of this problem!
    If a table is used within the Word document somewhere between where the cross reference source is and its destination then that particular cross reference will be broken as described above in my initial post.
    So the "fix" is to remove any occurances of a table in the Word document and the cross references come into InDesign perfectly. This is actually not a fix at all. I need to use tables in the Word document for layout purposes so if they break cross references if they stand between them and their destinations then I have to compromise, i.e. use tables but with no cross references in the document or vice versa.
    I found a similar issue recently with index markers in Word causing a shift on the cross reference tags when bought into InDesign. The "fix" again for that was to remove all index markers from the Word document. See post about this here: http://forums.adobe.com/thread/1043981
    InDesign really needs to sort out the issues with importing of Word documents with cross references in them. If I can't use index markers and tables in a Word document without breaking its cross references then they can't claim to have the ability to import a Word document while maintaining its cross references into an InDesign document. It just doesnt work as ive painstakingly proven.

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