How to compare between two versions of template project???

Dear All,
We are doing some cleanup activity in our solution manager system. For this actually we have created the replica of this project from production system to a sandbox system. We can do the cleanup of this project and can transport this new project to our production system and can move on.
But the pbm we are facing now is, how do we bring in the data captured or added to the production system after we have copied it to the sandbox system?
Can anybody throw in some light into this issue?
We tried the option of creating different version for the template and using the sa_project_upgrade transaction to compare between two versions of the template using "Current Version in Project" option. Not sure whether this will work out.
{{We thought that if we try in this way, we can find the difference between the two versions of the template project, and from there, might be we can bring in the new changes into our new project manually. We do agree that this is not the right approach.}}
But the end result we got was like we got the information regarding where all there is the difference between the current version in the template project to that of the original(in our case it checked against BPR as we selected the scenarios from BPR for this template). But what we expected was a difference between two versions of the template.
Pls help. Pls make a try to help. Any thoughts in this direction will help us to move forward.
Any info will be suitably rewarded.
best regards,
Krishna.

Hi Andreas,
Thanks a lot for your immediate reply.
I too had that doubt that my appraoch will not work. But wanted to get confirmation that it will not work. Also wanted to know about any other approach. Thank you for providing me with some alternative approach.
I tried the option suggested by you. But while running the comparison report for the newly copied project with the option "New Version of Original", I am getting the below error. I do agree that this approach should work. But for some reason I am getting the below error. Can you pls look into the same and help me out.
Internal error
Message no. AI_COMPARE006
Diagnosis
An unexpected error has occurred in:
           program CL_SA_PROJECT_UPGRADE_ONLINE==CP
           include CL_SA_PROJECT_UPGRADE_ONLINE==CM002
           line                                                  102
Procedure
Restart the transaction. If the problem persists, check if a SAP note is existing for this problem. If not please send a message to the SAP hotline.
Thanks a lot in advance.
best regards,
Krishna.

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