Incoming Payment::Charges deduction issue

While incoming payments entry some times there are charges which are deducted by the customers. (RTGS transfer charges, Postal charges etc. ).
How to make remarks for these charges in the incoming payment screen itself?
For Ex:
      Total Customer Due amount 10000.Rs
      He deducted                        200 Rs for transfer charge
      So he pass the check only for 9800 Rs.
       If am entering 9800 Rs in check payment screen it shows balance due Rs 200
So i dont want to display this balance due Rs 200. i need to close this balance due
i need remarks entry for  200 Rs (Reason for deduction) on payment mean screen
Any possibilities for this
Help me out

Vijay,
There are a few ways to handle this.
1.  Create a Service type Credit Memo for 200.00 on the Customer and in the description enter the details for the deduction and select the appropriate G/L account.
On the Incoming Payments window..select the Invoice and Credit Memo and complete the transaction.
2.  As mentioned earlier...Internal reconciliation and create a balancing JE

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