Macbook Pro takes a long time (41 secs) from start to reach log-in - It used to be almost instantaneous, I'm running Lion OS

My Macbook Pro takes a long time (41 secs) from start to reach log-in - It used to be almost instantaneous, I'm running Lion OS. I thought this might be because I'd used a lot of disk space but I've now reduced that - I'm only using 40 of the 320 gb available. I have no games and I've unchecked the "re-open windows" option on shutdown. The rest of the preformance (once in) remains good.

41 seconds is actually a little faster then normal. Boot from completely off is normally around 45-50 seconds.
Your computer never ever came on almost instantaneously from completely off. You are confusing waking up from sleep mode and booting the computer from completely off.

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    09/11/2012 22:29:03.246 sandboxd[271]: ([270]) mdworker(270) deny mach-lookup com.apple.ls.boxd
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    09/11/2012 22:33:20.720 sandboxd[288]: ([287]) mdworker(287) deny mach-lookup com.apple.ls.boxd
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    Hello everyone, English is not my mother tongue so may not be exactly correct, sorry about that.
    Background:
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    I did a clean installation and now Snow Leopard 10.6.2, with iLife, iWork, and many many apps.
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    (1) rename my HD to 'Michaels_Home' under 'Get Info' from Finder (I can't rename in Disk Utility though)
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    ==========
    *BUT NOW* I have a problem after:
    (1) log in as the root user, and use command +ditto -V xyz xyz+ to copy my home folder from '/Volumes/Michaels_Home/Users/Michael' to '/Users>Michael'
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    (3) use the Mac OS X Snow Leopard USD$29 disc to boot my Mac up
    (4) delete the 'Michaels_Home' partition (I had 3 partitions: (1) Macintosh HD (2) Michaels_Home (3) Windows XP Professional)
    (5) resize the 'Macintosh HD' partition
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    ==========
    Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: main(): argc=2
    Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[0] = /Applications/Utilities/X11.app/Contents/MacOS/X11.bin
    Mar 1 00:42:10 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[1] = -psn0139298
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    Mar 1 00:42:10 n219073058253 org.x.startx[335]: font_cache: Scanning user font directories to generate X11 font caches
    Mar 1 00:42:10 n219073058253 org.x.startx[335]: font_cache: Updating FC cache
    Mar 1 00:42:10 n219073058253 org.x.privileged_startx[344]: font_cache: Scanning system font directories to generate X11 font caches
    Mar 1 00:42:10 n219073058253 defaults[370]: \nThe domain/default pair of (org.x.X11, dpi) does not exist
    Mar 1 00:42:12 n219073058253 org.x.privileged_startx[344]: font_cache: Updating FC cache
    Mar 1 00:42:13 n219073058253 org.x.startx[335]: font_cache: Done
    Mar 1 00:42:14 n219073058253 org.x.privileged_startx[344]: font_cache: Done
    Mar 1 00:42:31 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.serverauth.335
    Mar 1 00:42:51 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.Xauthority
    Mar 1 00:43:31: --- last message repeated 1 time ---
    Mar 1 00:43:31 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.Xauthority
    Mar 1 00:43:51: --- last message repeated 1 time ---
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Listening on socket for fd handoff: (4) /var/tmp/tmp.0.9OYerf
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Thread created for handoff. Returning success to tell caller to connect and push the fd.
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Received new $DISPLAY fd: 6 ... sleeping to allow xinitrc to catchup.
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: dostart_x11server(): argc=6
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[0] = /usr/X11/bin/X
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[1] =
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[2] = -nolisten
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[3] = tcp
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[4] = -auth
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[5] = /Users/Michael/.serverauth.335
    Mar 1 00:43:51 n219073058253 org.x.startx[335]: Xquartz: Handoff connection established (try 1 of 5) on fd 6, "/var/tmp/tmp.0.9OYerf". Sending message.
    Mar 1 00:43:51 n219073058253 org.x.startx[335]: Xquartz: Message sent. Closing handoff fd.
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: Xquartz starting:
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: X.Org X Server 1.4.2-apple45
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: Build Date: 20090705
    Mar 1 00:43:51 n219073058253 [0x0-0x22022].org.x.X11[327]: (EE) XKB: Couldn't open rules file /usr/X11/share/X11/xkb/rules/base
    Mar 1 00:43:54: --- last message repeated 1 time ---
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app Handing off fd to server thread via DarwinListenOnOpenFD(6)
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: DarwinListenOnOpenFD: 6
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: Calling ListenOnOpenFD() for new fd: 6
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: X11.app: Launching /usr/X11/bin/xterm:
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[0] = /bin/sh
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[1] = -c
    Mar 1 00:43:54 n219073058253 [0x0-0x22022].org.x.X11[327]: argv[2] = /usr/X11/bin/xterm
    ==========
    I quit the X11:
    ==========
    Mar 1 00:45:45 n219073058253 [0x0-0x22022].org.x.X11[327]: Quitting Xquartz...
    Mar 1 00:45:45 n219073058253 org.x.startx[335]: /usr/X11/bin/xinit: connection to X server lost.
    Mar 1 00:45:45 n219073058253 org.x.startx[335]: waiting for X server to shut down
    ==========
    AFTER quitting X11, I can see something related X11 is stilling running:
    ==========
    Mar 1 00:46:06 n219073058253 org.x.startx[335]: xauth: timeout in locking authority file /Users/Michael/.Xauthority
    ==========
    So what actually causes this problem?
    Thanks in advance!

    It turns out that there's something wrong about permissions.
    Here's the fix:
    (1) log in as the +root user+
    (2) type +chown -R Michael:staff ~Michael+
    (3) log out the +root user+
    (4) log in your account
    (5) done!
    Hope this thread will help those who encounter the same problem as me!

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