My late 2009 macbook stopped booting up after swapping hdd's with a macbook of the same model with a newer OS what happened did I somehow update my older Mac hardware with newer OS software because it won't recognize the original hdd anymore

I swapped hdd's with two diff os's and now I'm getting the question mark in the folder icon after replacing the two to their original MacBooks but they work while swapped I realized afterwards that I wanted to use the newer OS in my external enclosure and keep the older hdd in the macbook it was in from the start ive reset pram tried to boot to the menus or what have you by following the step in these forums but my macbook isn't even recognizing the original hdd that came in the macbook

Try booting to the Startup Manager and select your system drive.
Startup Manager: How to select a startup volume
http://support.apple.com/kb/HT1310
Then see
http://support.apple.com/kb/TS2570
https://discussions.apple.com/docs/DOC-5282
Will it boot the disk when it is in an external enclosure but not when it is intsalled internaly?  If so it may be the internal SATA cable that is bad (an inexpensive part).

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