On My Mac folders Synchronizing problems across different MACs

I am getting frustrated dealing with synchronizing "On My Mac" folders across different MACs (I have 3, a laptop, a tower at home and one at office).
Let's just talk about my tower and laptop. When I need to get going, I always sync files so my laptop will have the same info as my tower. Before i sync tower/laptop, on my tower, I would transfer mail from the mail server to my local hard drive in "On My Mac" folders. I would then run a sync program to sync "On My Mac" folders between tower & laptop. Unfortunatly, when new mail files are loaded to the laptop, the mail program DOES NOT SEEM to automatically view the new mail "1234.emlx" file. The solution would be to run the "Rebuild" function. When that happens, sure, all the new mail loaded on my laptop becomes visible. But the repercussion is that Mail reconfigures and renumbers the original "1234.emlx" file to say "9876.emlx" file.
Well, guess what, when I have to sync my laptop with my tower again, the files in the tower now have to erase the "1234.emlx" files and have to load the "9876.emlx" files and the "Rebuild" button has to be engaged again, which would then again create a new file sequence "5432.emlx." Good gracious!!!!
And that's just sync between my tower and laptop. What about my third machine, the one at the office?? It gets confusing, and I end up losing mail. It's absurd.
Engineers at Apple, do the steps I describe above sound Apple-esque?? I hope you find a simple way to synch "On My Mac" folders, and might I hope you would even find a way to sync Pop mail??!! And whats the point of calling it full sync if .mac cannot give me the option of synching "On My Mac" mail??
Thanks
Power PC Tower   Mac OS X (10.4.7)  
Power PC Tower   Mac OS X (10.4.7)  

Synchronization of local mail data between computers by means of a file synchronization utility is a really bad idea if more than one computer is allowed to access mail between synchronizations.
The most prominent issue is that Mail keeps a reference to every message within the ~/Library/Mail/ folder in a global Envelope Index file. If this file is modified in more than one computer between synchronizations, there is no way a file synchronization utility can handle the situation properly.
Another, more subtle, and potentially more dangerous issue, is that Mail may use different *.emlx sequence numbers to name the same message in different computers or, worse yet, the same sequence number to name different messages in different computers. Again, the only thing a file synchronization utility can do about it is either overwrite files with the same name (thus potentially losing data) or not synchronize them at all.
Mail data "synchronization" at the filesystem level can only be done reliably if it's a one-way operation, i.e. if the entire contents of the Mail folder in one of the computers are overwritten by the entire contents of the other, and even then it may not work properly because of the issues described here:
Mac Backup Software Harmful
This is not an Apple thing, not even a Mail thing. You would encounter similar issues with any other mail client. The only reliable way to achieve mail synchronization between computers is using an IMAP account and storing mail on the server -- that's precisely what IMAP is for.

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