Percentage calculation on the Vendor payable amount

Hi Friends,
I am putting up a scenario and the requirement related to the vendor payment. It is as follows :
It is an agricultural business. Company is making down payment to vendors at the time of purchasing goods from them. They pay the balance after the end of season say after 1 or 2 months. While making the payment, they calculate 16% commission on the remaining amount and pay the same over and above the balance payment to the vendor.
Requirement : 
a. They want that 16% commission to be calculated by the system and make the posting with the consolidated payment.
b. They want it in bulk and hence through automatic payment program.
Kindly suggest at the earliest.
Thanks And Regards
Sagar P

Hi Ramki,
Thanks a lot for showing interest in helping me out. Also regrets for not replying soon.
I will explain you the process in detail :
This scenario is for their Sugar Factory.This client does contract with two types of vendors : 1. Contractors who owns Tractors & 2. Contractors who owns bullock carts. The contract is for a seaon in the year which is basically from October - March. Here contractors will provide sugarcane to the company. Here the company gives advance to the contractors and start purchasing sugar canes throughout the season. Their process is as follows :
1. CONTRACTORS PAYMENT SCENARIO :
The Process :  Advance to Contractors = Rs.150000 / Tractor.
2. BULLOCK CART CONTRACTORS SCENARIO :
The Process : Advance to Contractors = Rs.20000 / family.
Payment & Deductions :
Contractors will provide goods / services for free till the advance given is fully recovered. The entry of advance given will be made in the books in the first instance and the deductions will be settled with every bill / invoice raised by the contractor.
  During the season :
10% amount will be held (or recorded against security held) on every supply / service provided / Bill made.
Amount of Diesel / Bamboo sticks etc. will be settled. 
(ii) At the end of the season : 
Remaining amount if any will be paid after 15 days (as per the normal vendor payment process i.e. payment every 15 days)
Requirements of the client from SAP :
1. 10% Amount deduction while each bill / invoice posting to   these contractors (they will settle it at the end of the season)
2. Diesel Amount to be settled at the time of each invoice
3. Commission % to be specified to each contractor : 16% in the above case ( if advance taken) & (ii) 20% who do not take advance.
Kindly help.
Thanks And Regards
Sagar Padhye

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