Upgrading ISA 4.0 to "SAP E-Commerce for mySAP ERP"

We currently have a Internet Sales (R/3 edition) environment connected to a R/3 4.6C backend. We are upgrading the backend to mySAP ERP 2005. This has necessitated an upgrade of the Internet Sales environmet, too.
Has anyone does this or had any experience with the ISA side of this upgrade?
Currently the ISA 4.0 environment is running on a NW2004 SR1 framework with a SAP Web AS JAVA 6.40 (J2EE 6.40, too).
I know after this upgrade is completed, my environment will change to the following...(I think)
Internet Sales (R/3 Edition) will become "SAP E-Commerce for mySAP ERP"
NW2004 will become NW2004s SR1
J2EE 6.40 will become J2EE 7.00
I guess I'm looking for anyone who has been through this type of upgrade and how best to tackle it (aside from looking at the upgrade guides).
What to watch for? What to double-check? Anything noteworthy would be of value to me.
Should I even bother running through the upgrade process or should I just flatten the environment and start over with installation media?? Is that path easier and less of a pain?
I'm open for any feedback or thoughts.....
Thank you,
Bryan

Find this one
http://help.sap.com/bp_bblibrary/600/HTML/C20_EN_DE.htm

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