Company with 2 paying company codes

We have a requirement to have company A paid by company B's bank account for the majority of AP payment methods: BACS, Cheques etc.That works.
But company A also has it's own bank account and wishes to pay one payment type from that account.
Although I have sent up this payment method for company B, it still want to pay via F110 from the company B's bank account.
Has anyone been able to to configure a company with 2 paying company bank accounts?

I am not sure if you have understood the requirements
Company code B all payment methods is paid by company code B and B's bank account
Company code A all payment methods except one paid by company code B ans B'sbank account
New payment method only for company code A to be paid from company code A's bank account

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