Correct settings for flv video

I have a bunch of videos, which I exported from Premiere pro CS5.5 to mp4 files. After this I used the Media Encoder to encode those videos to flv-files. The I opened Flash pro CS5.5 > import video > publish as swf and html. Same settings in the Encoder and Flash but still only half of them work. Those sites / videos that don't work just load and load, but nothing happens. Only option I have so is to encode them again from mp4 to flv using different settings to find ones that work. Sometimes bitrate encoding should be CBR, but sometimes it's VBR. For some videos I should encode alpha channel and for others there is no need. This is so frustrating. I'm using a whole day with this trial & error thing. It's hard for me to believe, that encoding settings should have such effect on the outcome. Could someone please help me with this one?
Example of an non-working site http://ok-opintokeskus.fi/tapahtumavideo2/jalkitoimet/jalkitoimet.html
and a working one http://ok-opintokeskus.fi/tapahtumavideo2/toteuttajatyhteistk/toteuttajat_yhteistk.html

Graficozzo
If you have 1920 x 1080 60i that 60i is not 60 frames per second but rather 60 fields per second. Consider that the same as 29.97/30 interlaced frames per second.
So, you want the Premiere Elements 11 project preset to be
NTSC
AVCHD
AVCHD HD 1080i30
but if you have 5.1 channel audio with your video instead of stereo, then you want to use the project preset
NTSC
AVCHD
AVCHD HD 1080i30 5.1 channel
When you drag your video for the first time to the Expert view Timeline, the project should set this project preset for you based on those video properties. You can check what it has set by looking at Edit Menu/Project Settings/General and the reading for Editing Mode, Timebase, and Frame Size. If it does not set the correct project preset, you can do that manually with File Menu/New/Project before you import you video into the project.
Please review the above. If you have any questions or need clarification on anything that I have written please do not hesitate to ask.
Thank you.
ATR

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