Graphics in FrameMaker 9 lost when converted in Adobe Acrobat 9 Pro

Since upgrading to FrameMaker 9, some graphics that appear fine in FrameMaker become black boxes in the PDFs created by Adobe Acrobat 9 Pro. By finding the original graphic and reimporting it, the problem is solved, but the original graphic is not always available. Is there any other workaround to this problem created by the software? Suggestions would be gratefully appreciated!

I use Save As PDF (book). When I print to PDF, I don't get the problem (but I don't get the bookmarks)
I think you find in many places on this forum that the best practices for making a PDF is to print to the Adobe PDF printer, either directly or indirectly (saving the ps file and distilling with Distiller). It is my understanding that there are problems with Save As PDF.
In any event, you should be able to get bookmarks by printing to Adobe PDF printer. In the Print dialog, select Generate Acrobat Data and click PDF Setup. In the PDF setup dialog > Bookmarks tab, select Generate PDF Bookmarks and select the formats to bookmark. It is the same dialog that displays when you do Save As PDF.
Because your graphics are COPIED into the Frame files, I know of no way to get them out again from the Frame file. That is why I always import graphics by reference, so that the original graphic is always available if needed for editing or reimportation.
If you absolutely need a graphic file AND the Frame to PDF workflow is working properly, you can always create the PDF for the page with the graphic (turning OFF all resampling and compression). Then open the file in Illustrator and delete all but the graphic; then save as PDF or eps. Or open the PDF in Acrobat Professional and export the image (if a bitmap) or delete all but the graphic and save as PDF.

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