Hyperlinks not viewable by google

I have been trying to generate back links to my website (made using iweb) and have created several links to external websites using the "inspector" hyperlink creator in iweb.  The owner of one of these external web sites contacted me and advised that my link to their web site is in javascript format and will therefore not be picked up by google (not so good for reciprocal linking!)
I checked the source code of the relevant my web page and sure enough the link to this particular web site reads: <a onclick =....>.  I understand that a standard html type link should read <a href=....>.  I note that some of the hyperlinks in my website are in fact in standard html format, and I don't why some are in javascript and the others are in html format??
My question is 2 fold:
1) how can I make sure that my links are always in standard html format; and
2) how can I convert the javascript link into standard html format?
any help would be much apprecaited
regards
toz001

I also recall from some reading that the HTML snippet will not in itself help solve the problem.
I have been using some RAGE software to help with  SEO of my iWeb derived web site.  In particular, I use their SEO tool, webcrusher and sitemap automator.  If what is mentioned above about the site map works, I am not sure if I have in fact submitted a "complete site map" - including the "page B".  I simply use the site map automator and submit this.  How will I know if I have the elusive "page B" in the site map?
I have also tried to tackle this in a slightly different way with only partial success.  The RAGE SEO tool has a feature that enables you to put HTML code in a text box (not a HTML snippet) and have this HTML code converted after running it through the program.  It is primarily designed to create H1 header tags on an iWeb page.
I used this feature to try and create my HTML web link.  Rather than the H1 header tag HTML code, I have used the code outlined above: <a href="url of link" target="_blank" Name of link </a>.
This seems to "almost" work.  After running the RAGE software, I end up with an active hyperlink on the page.  However, when I click on it I end up with error noting that safari cant find the following page:
“/Users/Me/Desktop/Website folder name/”http//www.site I want to get to/”target=”_blank””
The link seems to be looking for the site on my Mac??  Please note that at this stage I have only published my web site on the desktop.  Am I getting close to getting this to work, or am I just dreaming??  Would this error go away if I were to publish the site to my host server?
This is all getting quite complicated!!

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