Java program not updating in correct sequence in applet

Greetings,
I have a java program with interactive graphic components. After completely writing the program, I create two shells ( or handle): an application shell with JFrame and an applet shell with JApplet. The application version of the program works fine. But the applet version skips some (middle) steps in the painting process when responding to user inputs.
Does anyone have any ideas as to what's going on?
I am not able to embed code snippets because my Internet has not being working and am finger typing this on my cellphone.
Thanks for any help.

My cable person won't come before Monday so I am struggling for now. Thanks for the replies, though.
More info:
1) both shells are extremely basic. They both simply add the drawing panel like so:
DrawingPane drawingPanel = new DrawingPanel();
add(drawingPanel);//frame.add for application
the application uses statc main; the applet uses init. Nothing more.
2) the program paints the hands and fingers of a stick figure red or green dependring on which foot of the figure is clicked.
3) the application version works completely
4) the applet version updates the right hand the first time; but not on subsequent clicks. More mysteriously, although it skips the hand, it still go on to update the fingers.
5) No I don't know about event threads yet.
Thanks.

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