More permission woes...pacman and dbus

hi again, i'm not sure if i should have put this in my other thread or not but here goes...
id recently managed to screw up a lot of permissions on a lot of the major directories with thunar. And after some advice in this forum managed to save myself from doing a reinstall with 'chmod 755 /var /etc /lib64 /boot /root /usr and /bin'. Now, i'm weeding through the various file permissions as and when they appear. I seem to be having problems with dbus when i'm using fwbackups
/usr/lib/python2.6/site-packages/Crypto/Hash/SHA.py:6: DeprecationWarning: the sha module is deprecated; use the hashlib module instead
from sha import *
/usr/lib/python2.6/site-packages/Crypto/Hash/MD5.py:6: DeprecationWarning: the md5 module is deprecated; use hashlib instead
from md5 import *
(fwbackups-runapp.pyw:4893): GVFS-RemoteVolumeMonitor-WARNING **: invoking IsSupported() failed for remote volume monitor with dbus name org.gtk.Private.GduVolumeMonitor: org.freedesktop.DBus.Error.Spawn.ChildSignaled: Process /usr/lib/gvfs/gvfs-gdu-volume-monitor received signal 6
so i tried a reinstall of dbus, which gave me the following error
checking package integrity...
(1/1) checking for file conflicts [#####################] 100%
(1/1) upgrading dbus [#####################] 100%
warning: directory permissions differ on etc/X11/
filesystem: 775 package: 755
warning: directory permissions differ on etc/X11/xinit/
filesystem: 775 package: 755
Since i messed with the directory permissions, and did the chmod 755, this has been happening with a lot of things ive tried to install. As you can probably guess i really don't have much of a clue whats goin on, any help would be greatly appreciated

never mind, i've come to the conclusion it'll be quicker to sort this out by doing a complete reinstall.

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  • Not sure if an update broke pacman and resolv.conf

    Hey guys
              Sorry about these noobish questions but I have googled and i just cant seem to find a solution.
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    First, I did a "pacman -Syu" and update the system earlier today.
    Then, I tried installing a package and i saw pacman cold not connect to mirrors. I did some search on the forums and people were pointing at resolv.conf issues. So i looked there and turns out I had
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    after restart,
    I noticed my resolv.conf had these lines
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    I couldnt connect to the internet with this.
    so i went ahead and added the "8.8.8.8" server and i could connect just fine.
    Not sure what caused this my machine was just fine before the "pacman -Syu" update. How do i check what packages were updated most recently ?
    2. I just cannot seem to connect to the mirrors anymore although i am connected to the internet just fine.
    Note: I did not change any config files unless the update changed these recently.
    Here is what i see
    [ibexmonj@ssy1 ~]$ sudo pacman -Syy
    :: Synchronizing package databases...
    error: failed retrieving file 'core.db' from mirror.rit.edu : Resolving timed out after 10519 milliseconds
    error: failed retrieving file 'core.db' from lug.mtu.edu : Resolving timed out after 10518 milliseconds
    error: failed retrieving file 'core.db' from mir.archlinux.fr : Resolving timed out after 10518 milliseconds
    error: failed retrieving file 'core.db' from archlinux.surlyjake.com : Resolving timed out after 10519 milliseconds
    error: failed retrieving file 'core.db' from mirror.bytemark.co.uk : Resolving timed out after 10519 milliseconds
    error: failed retrieving file 'core.db' from mirrors.liquidweb.com : Resolving timed out after 10520 milliseconds
    error: failed retrieving file 'core.db' from archlinux.mirrors.uk2.net : Resolving timed out after 10519 milliseconds
    error: failed retrieving file 'core.db' from archlinux.openlabto.org : Resolving timed out after 10519 milliseconds
    error: failed retrieving file 'core.db' from mirror.datacenter.by : Resolving timed out after 10521 milliseconds
    error: failed retrieving file 'core.db' from mirror.chmuri.net : Resolving timed out after 10519 milliseconds
    error: failed retrieving file 'core.db' from ftp5.gwdg.de : Resolving timed out after 10520 milliseconds
    error: failed retrieving file 'core.db' from mirror.selfnet.de : Resolving timed out after 10520 milliseconds
    error: failed retrieving file 'core.db' from mirror.yandex.ru : Resolving timed out after 10518 milliseconds
    error: failed retrieving file 'core.db' from archlinux.c3sl.ufpr.br : Resolving timed out after 10518 milliseconds
    error: failed retrieving file 'core.db' from arch.apt-get.eu : Resolving timed out after 10519 millise
    Here is my pacman.conf
    # /etc/pacman.conf
    # See the pacman.conf(5) manpage for option and repository directives
    # GENERAL OPTIONS
    [options]
    # The following paths are commented out with their default values listed.
    # If you wish to use different paths, uncomment and update the paths.
    #RootDir = /
    #DBPath = /var/lib/pacman/
    #CacheDir = /var/cache/pacman/pkg/
    #LogFile = /var/log/pacman.log
    #GPGDir = /etc/pacman.d/gnupg/
    HoldPkg = pacman glibc
    # If upgrades are available for these packages they will be asked for first
    #SyncFirst = pacman
    #XferCommand = /usr/bin/curl -C - -f %u > %o
    #XferCommand = /usr/bin/wget --passive-ftp -c -O %o %u
    #CleanMethod = KeepInstalled
    Architecture = auto
    # Pacman won't upgrade packages listed in IgnorePkg and members of IgnoreGroup
    #IgnorePkg =
    #IgnoreGroup =
    #NoUpgrade =
    #NoExtract =
    # Misc options
    #UseSyslog
    #UseDelta
    #TotalDownload
    CheckSpace
    #VerbosePkgLists
    # By default, pacman accepts packages signed by keys that its local keyring
    # trusts (see pacman-key and its man page), as well as unsigned packages.
    #SigLevel = Optional TrustedOnly
    # NOTE: You must run `pacman-key --init` before first using pacman; the local
    # keyring can then be populated with the keys of all official Arch Linux
    # packagers with `pacman-key --populate archlinux`.
    # REPOSITORIES
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    # - pacman will search repositories in the order defined here
    # - local/custom mirrors can be added here or in separate files
    # - repositories listed first will take precedence when packages
    # have identical names, regardless of version number
    # - URLs will have $repo replaced by the name of the current repo
    # - URLs will have $arch replaced by the name of the architecture
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    # Server = ServerName
    # Include = IncludePath
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    #Include = /etc/pacman.d/mirrorlist
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    SigLevel = PackageRequired
    Include = /etc/pacman.d/mirrorlist
    [extra]
    SigLevel = PackageRequired
    Include = /etc/pacman.d/mirrorlist
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    #Include = /etc/pacman.d/mirrorlist
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    Include = /etc/pacman.d/mirrorlist
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    Include = /etc/pacman.d/mirrorlist
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    My mirrorlist agreed its old but rankmirrors is also timing out
    ## Arch Linux repository mirrorlist
    ## Sorted by mirror score from mirror status page
    ## Generated on 2013-03-01
    ## Score: 0.3, United States
    #Server = [url]http://mirror.us.leaseweb.net/archlinux/$repo/os/$arch[/url]
    ## Score: 0.5, Germany
    #Server = [url]http://mirror.de.leaseweb.net/archlinux/$repo/os/$arch[/url]
    ## Score: 0.5, Netherlands
    #Server = [url]http://mirror.nl.leaseweb.net/archlinux/$repo/os/$arch[/url]
    ## Score: 0.7, United States
    Server = [url]http://mirror.rit.edu/archlinux/$repo/os/$arch[/url]
    ## Score: 0.7, Germany
    #Server = [url]http://ftp.tuxdroid.org/archlinux/$repo/os/$arch[/url]
    ## Score: 0.7, Germany
    #Server = [url]http://archlinux.limun.org/$repo/os/$arch[/url]
    ## Score: 0.8, United States
    Server = [url]http://lug.mtu.edu/archlinux/$repo/os/$arch[/url]
    ## Score: 0.9, France
    Server = [url]http://mir.archlinux.fr/$repo/os/$arch[/url]
    ## Score: 0.9, United States
    Please help guys
    Last edited by ibexmonj (2014-02-19 06:26:16)

    I only have a ethernet connection on my desktop  and i believe the only thing i setup (its been a while ) was dhcpcd
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    before this there was an update i did on 2/12 and that went fine as well. And i remember doing a few restarts then too.
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    [2014-02-18 22:28] [PACMAN] synchronizing package lists
    [2014-02-18 22:32] [PACMAN] Running 'pacman -Syyu'
    [2014-02-18 22:32] [PACMAN] synchronizing package lists
    [2014-02-18 22:40] [PACMAN] Running 'pacman -Syyu'
    [2014-02-18 22:40] [PACMAN] synchronizing package lists
    [2014-02-18 22:43] [PACMAN] Running 'pacman -Syyu'
    [2014-02-18 22:43] [PACMAN] synchronizing package lists
    [2014-02-18 22:44] [PACMAN] starting full system upgrade
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    [2014-02-18 22:45] [ALPM] warning: directory permissions differ on /var/db/
    filesystem: 775 package: 755
    [2014-02-18 22:45] [ALPM-SCRIPTLET] Generating locales...
    [2014-02-18 22:45] [ALPM-SCRIPTLET] en_US.UTF-8... done
    [2014-02-18 22:45] [ALPM-SCRIPTLET] Generation complete.
    [2014-02-18 22:45] [PACMAN] upgraded glibc (2.19-1 -> 2.19-2)
    [2014-02-18 22:45] [PACMAN] installed libusb (1.0.18-1)
    [2014-02-18 22:45] [PACMAN] upgraded calibre (1.23.0-1 -> 1.24.0-1)
    [2014-02-18 22:45] [PACMAN] upgraded cups-filters (1.0.44-2 -> 1.0.45-1)
    [2014-02-18 22:45] [PACMAN] upgraded dbus-glib (0.100.2-1 -> 0.102-1)
    [2014-02-18 22:45] [PACMAN] upgraded file (5.16-1 -> 5.17-1)
    [2014-02-18 22:45] [PACMAN] upgraded hicolor-icon-theme (0.12-2 -> 0.13-1)
    [2014-02-18 22:45] [PACMAN] upgraded sqlite (3.8.3-1 -> 3.8.3.1-1)
    [2014-02-18 22:45] [PACMAN] upgraded firefox (27.0-1 -> 27.0.1-1)
    [2014-02-18 22:45] [PACMAN] upgraded flex (2.5.37-1 -> 2.5.38-1)
    [2014-02-18 22:45] [PACMAN] upgraded libpng (1.6.8-1 -> 1.6.9-1)
    [2014-02-18 22:45] [PACMAN] upgraded gdk-pixbuf2 (2.30.4-1 -> 2.30.5-1)
    [2014-02-18 22:45] [PACMAN] upgraded geoclue2 (1.99.4-1 -> 2.0.0-1)
    [2014-02-18 22:45] [PACMAN] upgraded perl-error (0.17021-1 -> 0.17022-1)
    [2014-02-18 22:45] [PACMAN] upgraded git (1.8.5.4-1 -> 1.9.0-1)
    [2014-02-18 22:45] [PACMAN] upgraded gnome-control-center (3.10.2-1 -> 3.10.2-2)
    [2014-02-18 22:45] [PACMAN] upgraded p11-kit (0.20.1-1 -> 0.20.2-1)
    [2014-02-18 22:45] [PACMAN] upgraded gnutls (3.2.10-1 -> 3.2.11-1)
    [2014-02-18 22:45] [PACMAN] upgraded totem-plparser (3.10.0-4 -> 3.10.1-1)
    [2014-02-18 22:45] [PACMAN] upgraded grilo (0.2.8-1 -> 0.2.9-1)
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    [2014-02-18 22:45] [PACMAN] upgraded help2man (1.43.3-1 -> 1.44.1-1)
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    [2014-02-18 22:45] [PACMAN] upgraded mpg123 (1.18.0-1 -> 1.18.1-1)
    [2014-02-18 22:45] [PACMAN] upgraded python2 (2.7.6-1 -> 2.7.6-2)
    [2014-02-18 22:45] [PACMAN] upgraded pcsclite (1.8.10-1 -> 1.8.11-1)
    [2014-02-18 22:45] [PACMAN] upgraded perl-net-ssleay (1.56-1 -> 1.58-1)
    [2014-02-18 22:45] [PACMAN] upgraded perl-io-socket-ssl (1.962-1 -> 1.967-1)
    [2014-02-18 22:45] [PACMAN] upgraded pycups (1.9.63-1 -> 1.9.66-1)
    [2014-02-18 22:45] [PACMAN] upgraded python (3.3.3-1 -> 3.3.4-1)
    [2014-02-18 22:45] [PACMAN] upgraded t1lib (5.1.2-4 -> 5.1.2-5)
    [2014-02-18 22:45] [PACMAN] upgraded udisks2 (2.1.1-3 -> 2.1.2-1)
    Last edited by ibexmonj (2014-02-19 06:26:48)

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    warning: less-451-1 is up to date -- skipping
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    warning: lvm2-2.02.98-3 is up to date -- skipping
    warning: man-db-2.6.3-1 is up to date -- skipping
    warning: man-pages-3.44-1 is up to date -- skipping
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    Id=c2
    Name=XXX
    Timestamp=Mon 2014-04-14 20:06:49 BST
    TimestampMonotonic=41104959
    VTNr=7
    Display=:0
    Remote=no
    Service=kde
    Scope=session-c2.scope
    Leader=434
    Audit=0
    Type=x11
    Class=user
    Active=yes
    State=active
    IdleHint=no
    IdleSinceHint=0
    IdleSinceHintMonotonic=0
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    UNIT LOAD ACTIVE SUB DESCRIPTION
    proc-sys-fs-binfmt_misc.automount loaded active waiting Arbitrary Executable File Formats File System Automount Point
    sys-devices-pci0000:00-0000:00:02.0-backlight-acpi_video0.device loaded active plugged /sys/devices/pci0000:00/0000:00:02.0/backlight/acpi_video0
    sys-devices-pci0000:00-0000:00:02.0-drm-card1-card1\x2deDP\x2d1-intel_backlight.device loaded active plugged /sys/devices/pci0000:00/0000:00:02.0/drm/card1/card1-eDP-1/intel_backlight
    sys-devices-pci0000:00-0000:00:14.0-usb1-1\x2d1-1\x2d1:1.0-host3-target3:0:0-3:0:0:0-block-sdb-sdb1.device loaded active plugged micro_USB Linux_Mint_16_Cinnamon_64-bit
    sys-devices-pci0000:00-0000:00:14.0-usb1-1\x2d1-1\x2d1:1.0-host3-target3:0:0-3:0:0:0-block-sdb-sdb2.device loaded active plugged micro_USB Linux_Mint_16_Cinnamon_64-bit
    sys-devices-pci0000:00-0000:00:14.0-usb1-1\x2d1-1\x2d1:1.0-host3-target3:0:0-3:0:0:0-block-sdb-sdb3.device loaded active plugged micro_USB Linux_Mint_16_Cinnamon_64-bit
    sys-devices-pci0000:00-0000:00:14.0-usb1-1\x2d1-1\x2d1:1.0-host3-target3:0:0-3:0:0:0-block-sdb.device loaded active plugged micro_USB Linux_Mint_16_Cinnamon_64-bit
    sys-devices-pci0000:00-0000:00:14.0-usb1-1\x2d7-1\x2d7:1.0-bluetooth-hci0-rfkill2.device loaded active plugged /sys/devices/pci0000:00/0000:00:14.0/usb1/1-7/1-7:1.0/bluetooth/hci0/rfkill2
    sys-devices-pci0000:00-0000:00:14.0-usb1-1\x2d7-1\x2d7:1.0-bluetooth-hci0.device loaded active plugged /sys/devices/pci0000:00/0000:00:14.0/usb1/1-7/1-7:1.0/bluetooth/hci0
    sys-devices-pci0000:00-0000:00:16.3-tty-ttyS0.device loaded active plugged Lynx Point-LP HECI KT
    sys-devices-pci0000:00-0000:00:19.0-net-enp0s25.device loaded active plugged Ethernet Connection I218-LM
    sys-devices-pci0000:00-0000:00:1b.0-sound-card0.device loaded active plugged Lynx Point-LP HD Audio Controller
    sys-devices-pci0000:00-0000:00:1c.1-0000:03:00.0-ieee80211-phy0-rfkill1.device loaded active plugged /sys/devices/pci0000:00/0000:00:1c.1/0000:03:00.0/ieee80211/phy0/rfkill1
    sys-devices-pci0000:00-0000:00:1c.1-0000:03:00.0-net-wlp3s0.device loaded active plugged Dual Band Wireless-N 7260
    sys-devices-pci0000:00-0000:00:1c.4-0000:04:00.0-backlight-acpi_video1.device loaded active plugged /sys/devices/pci0000:00/0000:00:1c.4/0000:04:00.0/backlight/acpi_video1
    sys-devices-pci0000:00-0000:00:1f.2-ata1-host0-target0:0:0-0:0:0:0-block-sda-sda1.device loaded active plugged Crucial_CT480M500SSD1 1
    sys-devices-pci0000:00-0000:00:1f.2-ata1-host0-target0:0:0-0:0:0:0-block-sda-sda2.device loaded active plugged Crucial_CT480M500SSD1 2
    sys-devices-pci0000:00-0000:00:1f.2-ata1-host0-target0:0:0-0:0:0:0-block-sda-sda3.device loaded active plugged Crucial_CT480M500SSD1 3
    sys-devices-pci0000:00-0000:00:1f.2-ata1-host0-target0:0:0-0:0:0:0-block-sda.device loaded active plugged Crucial_CT480M500SSD1
    sys-devices-platform-serial8250-tty-ttyS1.device loaded active plugged /sys/devices/platform/serial8250/tty/ttyS1
    sys-devices-platform-serial8250-tty-ttyS2.device loaded active plugged /sys/devices/platform/serial8250/tty/ttyS2
    sys-devices-platform-serial8250-tty-ttyS3.device loaded active plugged /sys/devices/platform/serial8250/tty/ttyS3
    sys-devices-platform-thinkpad_acpi-rfkill-rfkill0.device loaded active plugged /sys/devices/platform/thinkpad_acpi/rfkill/rfkill0
    sys-devices-platform-thinkpad_acpi-sound-card1.device loaded active plugged /sys/devices/platform/thinkpad_acpi/sound/card1
    sys-module-configfs.device loaded active plugged /sys/module/configfs
    sys-module-fuse.device loaded active plugged /sys/module/fuse
    sys-subsystem-bluetooth-devices-hci0.device loaded active plugged /sys/subsystem/bluetooth/devices/hci0
    sys-subsystem-net-devices-enp0s25.device loaded active plugged Ethernet Connection I218-LM
    sys-subsystem-net-devices-wlp3s0.device loaded active plugged Dual Band Wireless-N 7260
    -.mount loaded active mounted /
    boot-efi.mount loaded active mounted /boot/efi
    dev-hugepages.mount loaded active mounted Huge Pages File System
    dev-mqueue.mount loaded active mounted POSIX Message Queue File System
    run-user-0.mount loaded active mounted /run/user/0
    run-user-1000-gvfs.mount loaded active mounted /run/user/1000/gvfs
    run-user-1000.mount loaded active mounted /run/user/1000
    sys-fs-fuse-connections.mount loaded active mounted FUSE Control File System
    sys-kernel-config.mount loaded active mounted Configuration File System
    sys-kernel-debug.mount loaded active mounted Debug File System
    tmp.mount loaded active mounted Temporary Directory
    systemd-ask-password-console.path loaded active waiting Dispatch Password Requests to Console Directory Watch
    systemd-ask-password-wall.path loaded active waiting Forward Password Requests to Wall Directory Watch
    session-c1.scope loaded active running Session c1 of user root
    session-c2.scope loaded active running Session c2 of user mcgoldrickm
    bluetooth.service loaded active running Bluetooth service
    dbus.service loaded active running D-Bus System Message Bus
    [email protected] loaded active running Getty on tty1
    kdm.service loaded active running K Display Manager
    kmod-static-nodes.service loaded active exited Create list of required static device nodes for the current kernel
    NetworkManager.service loaded active running Network Manager
    ntpd.service loaded active running Network Time Service
    pdnsd.service loaded active running proxy name server
    polkit.service loaded active running Authorization Manager
    rtkit-daemon.service loaded active running RealtimeKit Scheduling Policy Service
    systemd-backlight@backlight:acpi_video0.service loaded active exited Load/Save Screen Backlight Brightness of backlight:acpi_video0
    systemd-backlight@backlight:acpi_video1.service loaded active exited Load/Save Screen Backlight Brightness of backlight:acpi_video1
    systemd-backlight@backlight:intel_backlight.service loaded active exited Load/Save Screen Backlight Brightness of backlight:intel_backlight
    systemd-hostnamed.service loaded active running Hostname Service
    systemd-journald.service loaded active running Journal Service
    systemd-logind.service loaded active running Login Service
    systemd-random-seed.service loaded active exited Load/Save Random Seed
    systemd-remount-fs.service loaded active exited Remount Root and Kernel File Systems
    [email protected] loaded active exited Load/Save RF Kill Switch Status of rfkill0
    [email protected] loaded active exited Load/Save RF Kill Switch Status of rfkill1
    [email protected] loaded active exited Load/Save RF Kill Switch Status of rfkill2
    systemd-sysctl.service loaded active exited Apply Kernel Variables
    systemd-tmpfiles-setup-dev.service loaded active exited Create Static Device Nodes in /dev
    systemd-tmpfiles-setup.service loaded active exited Create Volatile Files and Directories
    systemd-udev-trigger.service loaded active exited udev Coldplug all Devices
    systemd-udevd.service loaded active running udev Kernel Device Manager
    systemd-update-utmp.service loaded active exited Update UTMP about System Boot/Shutdown
    systemd-user-sessions.service loaded active exited Permit User Sessions
    systemd-vconsole-setup.service loaded active exited Setup Virtual Console
    udisks2.service loaded active running Disk Manager
    upower.service loaded active running Daemon for power management
    [email protected] loaded active running User Manager for UID 0
    [email protected] loaded active running User Manager for UID 1000
    wpa_supplicant.service loaded active running WPA supplicant
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    system-getty.slice loaded active active system-getty.slice
    system-systemd\x2dbacklight.slice loaded active active system-systemd\x2dbacklight.slice
    system-systemd\x2drfkill.slice loaded active active system-systemd\x2drfkill.slice
    system.slice loaded active active System Slice
    user-0.slice loaded active active user-0.slice
    user-1000.slice loaded active active user-1000.slice
    user.slice loaded active active User and Session Slice
    dbus.socket loaded active running D-Bus System Message Bus Socket
    dmeventd.socket loaded active listening Device-mapper event daemon FIFOs
    lvmetad.socket loaded active listening LVM2 metadata daemon socket
    systemd-initctl.socket loaded active listening /dev/initctl Compatibility Named Pipe
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    systemd-shutdownd.socket loaded active listening Delayed Shutdown Socket
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    basic.target loaded active active Basic System
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    cryptsetup.target loaded active active Encrypted Volumes
    getty.target loaded active active Login Prompts
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    local-fs-pre.target loaded active active Local File Systems (Pre)
    local-fs.target loaded active active Local File Systems
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    paths.target loaded active active Paths
    remote-fs.target loaded active active Remote File Systems
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    swap.target loaded active active Swap
    sysinit.target loaded active active System Initialization
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