Python numeric goes numpy
Hello everyone,
I am using a lot of science packages for python. The current 'standard' package for numerical computation in python is 'python-numeric'. Tomorrow (october 25th) is the official release day for the replacement of numeric, called numpy. It is from the same author, Travis Oliphant, and has a very active user community. A few python packages that were using numeric are already enabled to use numpy, e.g. matplotlib and pytables. Some packages need a recompile (e.g. pytables), while the pure python packages, e.g. matplotlib, can use it at runtime.
There is currently a 'numpy' package (rc2) in AUR, along with two dependencies in AUR, and even though I already voted for it, I would like to know if there are any immediate plans to include python-numpy into the official arch tree? This would make it a lot easier to build numeric python extensions for arch. I think it is already as important as python-numeric, judging from the traffic on their official mailing list.
Best regards,
Niklas.
numpy works with 2.4 and (as far as I remember from their mailing list) with 2.5. I don't know about 2.3 though. The core of the numpy package (the array protocol) was actually meant to be put into python 2.5, but didn't make it on time.
Numpy is the successor and a full replacement for both numeric and numarray. On the C-API side, there is a compatibility layer (or something similar), so that existing C-extensions written for numeric can easily switch to numpy. The biggest disadvantage of numeric, the time for the creation of new arrays, has been solved and is supposedly even better than in numarray.
A lot more information can be found on http://www.scipy.org.
Similar Messages
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[FIXED]Problems installing python-numeric, pycairo and pygtk
I'm getting these errors when installing these dependencides for gimp:
[root@Darkstar ~]# pacman -Sf python-numeric
Targets: python-numeric-24.2-1
Total Package Size: 0.6 MB
Proceed with upgrade? [Y/n]
checking package integrity... done.
loading package data... done.
installing python-numeric... db_write: Input/output error
error updating database for python-numeric!
Without -f it says that already exists some files in system:
[root@Darkstar ~]# pacman -S python-numeric
Targets: python-numeric-24.2-1
Total Package Size: 0.6 MB
Proceed with upgrade? [Y/n]
checking package integrity... done.
loading package data... done.
checking for file conflicts...
error: the following file conflicts were found:
python-numeric: /usr/include/python2.4/Numeric/arrayobject.h: exists in filesystem
python-numeric: /usr/include/python2.4/Numeric/f2c.h: exists in filesystem
python-numeric: /usr/include/python2.4/Numeric/ranlib.h: exists in filesystem
python-numeric: /usr/include/python2.4/Numeric/ufuncobject.h: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric.pth: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/ArrayPrinter.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/ArrayPrinter.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/FFT/FFT.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/FFT/FFT.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/FFT/__init__.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/FFT/__init__.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/FFT/fftpack.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/LinearAlgebra.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/LinearAlgebra.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MA/MA.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MA/MA.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MA/MA_version.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MA/MA_version.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MA/__init__.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MA/__init__.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MLab.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/MLab.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Matrix.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Matrix.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Numeric.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Numeric.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Numeric_headers/__init__.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Numeric_headers/__init__.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Precision.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/Precision.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RNG/RNG.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RNG/Statistics.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RNG/Statistics.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RNG/__init__.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RNG/__init__.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RandomArray.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/RandomArray.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/UserArray.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/UserArray.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/_numpy.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/arrayfns.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/lapack_lite.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/multiarray.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/numeric_version.py: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/numeric_version.pyc: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/ranlib.so: exists in filesystem
python-numeric: /usr/lib/python2.4/site-packages/Numeric/umath.so: exists in filesystem
errors occurred, no packages were upgraded.
This happened also to the other 2, pygtk i installed with pacman -Sdf pygtk and it installed but the others gave me that error.it looks like a database problem, like it has no record of the package being installed previously and cannot write to it again after the update. Anything irregular with your permissions to /var/lib/pacman/local? I would try deleting the offending database entries in /var/lib/pacman/local/<pkgname> and reinstalling each again.
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Failing to install the python Numeric library
I have the latest Xcode 3.1.2 developer tools installed. I need to install the python Numeric library since I want to use existing python modules which were developed several years ago using that library. I downloaded the Numeric-24.2 tar file from Sourceforge and began the install process with the command:
python setup.py build
Within a minute, the install process stopped with the last several lines being:
gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -Os -Wall -Wstrict-prototypes -DMACOSX -I/usr/include/ffi -DENABLE_DTRACE -arch i386 -arch ppc -pipe -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/System/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5 -c Packages/RNG/Src/ranf.c -o build/temp.macosx-10.5-i386-2.5/Packages/RNG/Src/ranf.o
Packages/RNG/Src/ranf.c: In function ‘Mixranf’:
Packages/RNG/Src/ranf.c:153: error: conflicting types for ‘gettimeofday’
/usr/include/sys/time.h:211: error: previous declaration of ‘gettimeofday’ was here
Packages/RNG/Src/ranf.c: In function ‘Mixranf’:
Packages/RNG/Src/ranf.c:153: error: conflicting types for ‘gettimeofday’
/usr/include/sys/time.h:211: error: previous declaration of ‘gettimeofday’ was here
lipo: can't open input file: /var/tmp//cc83Ujvw.out (No such file or directory)
error: command 'gcc' failed with exit status 1
I admit I am treating the installation script as a "blackbox" and do not follow everything that it does. I had assumed that I would have no troubles on the Mac since I successfully installed the library under Linux Red Hat 3.4.6-9 by issuing the same command.
Can someone give me guidance in getting this Numeric library installed?
** Kerwindobbskd wrote:
I admit I am treating the installation script as a "blackbox" and do not follow everything that it does. I had assumed that I would have no troubles on the Mac since I successfully installed the library under Linux Red Hat 3.4.6-9 by issuing the same command.
Can someone give me guidance in getting this Numeric library installed?
Update or fix it. According to the comments in ranf.c, that file is 12 years old. Here is where it dies:
#if !defined(__sgi)
int gettimeofday(struct timeval *, struct timezone *);
#endif
Since MacOS X isn't an SGI, it tries to define this function differently than it is defined in sys/time.h.
It seems that the Linux version of GCC has every warning and compilation flag turned off so that bad code will compile on it. -
Python-scipy vs. python-numpy [solved]
Up till now I have been using a custom package for python-numpy (the successor of python-numeric) and the AUR package for python-scipy (which depends on a working numpy installation). However, now the scipy package seems to be adopted and when I try to -Syu, pacman claims that python-scipy conflicts with python-numpy and suggests that numpy should be removed.
I won't do that, since numpy is vital to many of my applications, and I wonder if this was really intended.
Can anybody explain this to me?
Niklas.Problem solved, works now.
I removed python-numpy, then re-installed python-scipy (which then automatically proposed python-numpy from community). Might have been some strange thing in my old PKGBUILD for python-numpy.
Anyway, thanks for finally putting both numpy and scipy into community!!! -
Fofix win't run (numpy python error?)
[gert@boks lib]$ fofix
Traceback (most recent call last):
File "./FoFiX.py", line 108, in <module>
from GameEngine import GameEngine
File "/opt/fofix/src/GameEngine.py", line 32, in <module>
from numpy import array, float32
File "/usr/lib/python2.7/site-packages/numpy/__init__.py", line 136, in <module>
import add_newdocs
File "/usr/lib/python2.7/site-packages/numpy/add_newdocs.py", line 9, in <module>
from numpy.lib import add_newdoc
File "/usr/lib/python2.7/site-packages/numpy/lib/__init__.py", line 13, in <module>
from polynomial import *
File "/usr/lib/python2.7/site-packages/numpy/lib/polynomial.py", line 11, in <module>
import numpy.core.numeric as NX
AttributeError: 'module' object has no attribute 'core'
My google-fu pointed me towards me lacking f2py, but from what I can understand, this is included in python2-numpy?
Installed python packages:
[gert@boks lib]$ pacman -Qs python
local/cx_freeze 4.2.1-1
A set of utilities for freezing Python scripts into executables
local/dbus-python 0.83.1-2
Python bindings for DBUS
local/gstreamer0.10-python 0.10.18-3
Python bindings for GStreamer 0.10
local/kdebindings-python 4.6.0-1
KDE bindings for python
local/mutagen 1.20-3
An audio metadata tag reader and writer implemented in pure python
local/pycups 1.9.53-1
Python CUPS Bindings
local/pygobject 2.26.0-2
Python bindings for GObject
local/pygtk 2.22.0-3
Python bindings for the GTK widget set
local/pyogg 1.3-6
Python ogg wrapper library
local/pysmbc 1.0.10-1
Python libsmbclient bindings
local/python 3.1.3-2
Next generation of the python high-level scripting language
local/python-imaging 1.1.7-2
PIL. Provides image processing capabilities for python
local/python-lxml 2.2.8-2
Python binding for the libxml2 and libxslt libraries
local/python-mechanize 0.2.4-1
Stateful programmatic web browsing in Python
local/python-numeric 24.2-5
Numerical Python adds a fast array facility to the Python language
local/python-opengl 3.0.1-2
The cross platform Python binding to OpenGL and related APIs
local/python-pygame 1.9.1-3
Python game library
local/python-pysqlite 2.6.0-2
A Python DB-API 2.0 interface for the SQLite embedded relational database engine
local/python-sqlalchemy 0.6.6-1
Python SQL toolkit and Object Relational Mapper
local/python2 2.7.1-4
A high-level scripting language
local/python2-cairo 1.8.10-1
Python2 bindings for the cairo graphics library
local/python2-distribute 0.6.14-2
A collection of extensions to the Python 2 distutils
local/python2-numpy 1.5.1-1
Scientific tools for Python
local/python2-pyparsing 1.5.5-1
General parsing module for Python
local/python2-qt 4.8.3-1
A set of Python 2 bindings for the Qt toolkit
local/python2-sip 4.12.1-1
A tool that makes it easy to create Python 2 bindings for C and C++ libraries
local/pyvorbis 1.4-5
Python vorbis wrapper library
local/pyxml 0.8.4-8
Python XML parsing libraryHas this problem come back? I'm using Blas and Lapack 3.3.1 but I'm getting the same error as the original poster meaning FOFIX won't start.
ben@bahamut ~ $ fofix
Traceback (most recent call last):
File "./FoFiX.py", line 108, in <module>
from GameEngine import GameEngine
File "/opt/fofix/src/GameEngine.py", line 32, in <module>
from numpy import array, float32
File "/usr/lib/python2.7/site-packages/numpy/__init__.py", line 136, in <module>
import add_newdocs
File "/usr/lib/python2.7/site-packages/numpy/add_newdocs.py", line 9, in <module>
from numpy.lib import add_newdoc
File "/usr/lib/python2.7/site-packages/numpy/lib/__init__.py", line 13, in <module>
from polynomial import *
File "/usr/lib/python2.7/site-packages/numpy/lib/polynomial.py", line 11, in <module>
import numpy.core.numeric as NX
AttributeError: 'module' object has no attribute 'core' -
Is Dbus going to be upgraded with Python?
Python 2.5 is now in testing. Upgrading Python is going to require a gigantic amount recompiling of programs. Wouldn't this be the best time to upgrade DBus to 1.0?
AndyRTR wrote:we plan to upgrade dbus together with the next gnome release.
Ok thanks for the information -
Numpy package installs in the $HOME
I wanted to compile numpy with Atlas support, so I downloaded the package and edited the PKGBUILD adding the lib names:
# $Id: PKGBUILD 169025 2012-10-17 10:20:51Z allan $
# Maintainer: Jan de Groot <[email protected]>
# Contributor: Douglas Soares de Andrade <[email protected]>
# Contributor: Angel 'angvp' Velasquez <angvp[at]archlinux.com.ve>
pkgbase=python-numpy
pkgname=('python2-numpy' 'python-numpy')
pkgver=1.7.0
_pkgver=1.7.0b2
pkgrel=1
pkgdesc="Scientific tools for Python"
arch=('i686' 'x86_64')
license=('custom')
url="http://numpy.scipy.org/"
makedepends=('lapack' 'python' 'python2' 'python-distribute' 'python2-distribute' 'gcc-fortran' 'python-nose')
source=(http://downloads.sourceforge.net/numpy/numpy-${_pkgver}.tar.gz)
md5sums=('1b62cf0e34e2db58b0241b00d603df24')
build() {
cd "${srcdir}"
cp -a numpy-${_pkgver} numpy-py2-${_pkgver}
export BLAS=/usr/lib/libblas.so
export LAPACK=/usr/lib/liblapack.so
export ATLAS=/usr/lib/libatlas.so
export LDFLAGS="$LDFLAGS -shared"
echo "Building Python2"
cd "${srcdir}/numpy-py2-${_pkgver}"
python2 setup.py config_fc --fcompiler=gnu95 build
echo "Building Python3"
cd "${srcdir}/numpy-${_pkgver}"
python setup.py config_fc --fcompiler=gnu95 build
package_python2-numpy() {
depends=('lapack' 'python2')
optdepends=('python-nose: testsuite')
cd "${srcdir}/numpy-py2-${_pkgver}"
python2 setup.py config_fc --fcompiler=gnu95 install --prefix=/usr --root="${pkgdir}" --optimize=1
install -m755 -d "${pkgdir}/usr/share/licenses/python2-numpy"
install -m644 LICENSE.txt "${pkgdir}/usr/share/licenses/python2-numpy/"
sed -i -e "s|#![ ]*/usr/bin/python$|#!/usr/bin/python2|" \
-e "s|#![ ]*/usr/bin/env python$|#!/usr/bin/env python2|" \
-e "s|#![ ]*/bin/env python$|#!/usr/bin/env python2|" \
$(find ${pkgdir} -name '*.py')
package_python-numpy() {
depends=('lapack' 'python')
provides=("python3-numpy=${pkgver}")
replaces=('python3-numpy')
conflicts=('python3-numpy')
cd "${srcdir}/numpy-${_pkgver}"
python setup.py config_fc --fcompiler=gnu95 install --prefix=/usr --root="${pkgdir}" --optimize=1
install -m755 -d "${pkgdir}/usr/share/licenses/python3-numpy"
install -m644 LICENSE.txt "${pkgdir}/usr/share/licenses/python3-numpy/"
as suggested in the numpy site I used ldd to double check that the .so files are indeed compiled with gfortran...
So far, so good.
I unset python related variables, and start the build:
$ unset PYTHONPATH
$ unset PYTHONSTARTUP
$ makepkg
But, the result still puts the files in the directory in my home!
$ find pkg
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/unixccompiler.py
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/misc_util.py
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/setupscons.py
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/mingw
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/mingw/gfortran_vs2003_hack.c
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/pathccompiler.py
pkg/python-numpy/home/ezzetabi/pythonlib/numpy/distutils/cpuinfo.py
How is possible? I am going crazy, help!
Thanks
Last edited by ezzetabi (2012-12-20 10:59:59)@thisoldman
What? Of course I did not installed it! The pkg directory shows a wrong structure! And the reason of that was the question.
Got it... I made time ago the ~/.pydistutils.cfg file to install a python package in my home and I forgot about it...
~/.pydistutils.cfg
[install]
install_lib = ~/pythonlib
install_scripts = ~/pythonlib/bin
My fault, yet I guess the package should ignore it somewhat...
Last edited by ezzetabi (2012-12-20 10:59:35) -
I just got a new cell phone, which is supposed to play nicely with BitPim via Bluetooth. I have pairing between my laptop's usb dongle and my cell phone working. The next step is not going very well - most likely to my lack of python knowledge.
I got the bitpim-release PKGBUILD from unsupported, and attempted to create an Arc package from the rpm, which I got from the website. Seeing that the PKGBUILD wanted 1.0.1, I went with that first.
I got everything into a directory, and ran makepkg. The package was created with no warnings. I used pacman -U <new package name>, and it installed without warnings. However, it throws an exception when I start the program.
database integrity check
database integrity check complete
setting windows/CalendarEntryEditor to size 532 x 399
Exception in getting image file - you can't do that!
Traceback (most recent call last):
File "src/wallpaper.py", line 578, in OpenFile
File "src/wallpaper.py", line 608, in _OpenFile
File "src/wallpaper.py", line 625, in OpenBPImageFile
File "src/wallpaper.py", line 651, in BPFSImageFile
File "src/wallpaper.py", line 479, in ScaleImageIntoBitmap
File "/usr/lib/python2.3/site-packages/wx-2.8-gtk2-unicode/wx/_gdi.py", line 715, in EmptyBitmap
PyAssertionError: C++ assertion "depth == visual->depth" failed at ../src/gtk/bitmap.cpp(292) in Create(): invalid bitmap depth
Variables by last 8 frames, innermost last
Frame OpenFile in src/wallpaper.py at line 582
res = None
self = <wallpaper.BPFSHandler; proxy of <Swig Object of type 'wxPyFileSystemHandler *'
location = u'bpimage:ringer.png;width=24;height=24'
filesystem = <wx._core.FileSystem; proxy of <Swig Object of type 'wxFileSystem *' at 0x93a68c
Frame _OpenFile in src/wallpaper.py at line 608
proto = u'bpimage'
self = <wallpaper.BPFSHandler; proxy of <Swig Object of type 'wxPyFileSystemHandler *'
param = u'height=24'
p = Keys ['height', 'width']
{'width': 24, 'height': 24}
r = u'ringer.png'
params = [u'width=24', u'height=24']
value = u'24'
key = 'height'
filesystem = <wx._core.FileSystem; proxy of <Swig Object of type 'wxFileSystem *' at 0x93a68c
x = 6
location = u'bpimage:ringer.png;width=24;height=24'
Frame OpenBPImageFile in src/wallpaper.py at line 625
name = u'ringer.png'
f = u'/usr/lib/BitPim-1.0.1/resources/ringer.png'
res = None
self = <wallpaper.BPFSHandler; proxy of <Swig Object of type 'wxPyFileSystemHandler *'
si = (33261, 309649L, 771L, 0, 0, 831L, 1186440854, 1194093855)
location = u'bpimage:ringer.png;width=24;height=24'
kwargs = Keys ['height', 'width']
{'width': 24, 'height': 24}
Frame BPFSImageFile in src/wallpaper.py at line 651
name = u'/usr/lib/BitPim-1.0.1/resources/ringer.png'
img = <wx._core.Image; proxy of <Swig Object of type 'wxImage *' at 0x8dd5cd0> >
width = 24
height = 24
bgcolor = None
location = u'bpimage:ringer.png;width=24;height=24'
valign = 'center'
fshandler = <wallpaper.BPFSHandler; proxy of <Swig Object of type 'wxPyFileSystemHandler *'
Frame ScaleImageIntoBitmap in src/wallpaper.py at line 479
bgcolor = None
usewidth = 24
useheight = 24
img = <wx._core.Image; proxy of <Swig Object of type 'wxImage *' at 0x8dd5cd0> >
valign = 'center'
Frame EmptyBitmap in /usr/lib/python2.3/site-packages/wx-2.8-gtk2-unicode/wx/_gdi.py at line 715
args = (24, 24, 24)
kwargs = Keys []
So I tried updating the PKGBUILD to handle the new release, 1.0.2. Here are my deltas from the PKGBUILD in unsupported:
diff PKGBUILD PKGBUILD-1.0.2
4c4
< pkgver=1.0.1
> pkgver=1.0.2
9,10c9,10
< source=(http://superb-east.dl.sourceforge.net/sourceforge/bitpim/bitpim-$pkgver-0.i386.rpm)
< md5sums=('0c357a56ddc67db77046e693e9761c0d')
> source=(http://superb-east.dl.sourceforge.net/sourceforge/bitpim/bitpim-$pkgver-$pkgrel.i386.rpm)
> md5sums=('07d450c6fae75c48118c5084a17887f1')
25c25
< }
> }
\ No newline at end of file
Creation of the 1.0.2 package from the rpm went just as smoothly as the first. Installing via pacman (removed 1.0.1 package first) also worked perfectly. Running it goes differently, but not by much.
bitpim
Traceback (most recent call last):
File "/opt/cx_Freeze-3.0.3/initscripts/ConsoleSetLibPath.py", line 35, in <module>
File "src/bp.py", line 108, in <module>
File "src/gui.py", line 26, in <module>
File "/usr/lib/python2.5/sha.py", line 6, in <module>
from hashlib import sha1 as sha
File "/usr/lib/python2.5/hashlib.py", line 133, in <module>
md5 = __get_builtin_constructor('md5')
File "/usr/lib/python2.5/hashlib.py", line 60, in __get_builtin_constructor
import _md5
ImportError: No module named _md5
A quick google search gave me the following command...
python -c 'import md5; md5.new()'
...which worked flawlessly.
The other google results seem to indicate issues with python upgrades gone awry.
I'm running:
gnome-python 2.20.0-1
gnome-python-desktop 2.20.0-2
gnome-python-extras 2.14.3-1
mysql-python 1.2.2-1
python 2.5.1-3
python-m2crypto 0.16-2
python-numeric 24.2-2
python-pyspi 0.6.1-2
wxpython 2.8.4.0-1
I don't know much of anything about python. I'm hoping this is something simple, like a library path or something.Have you resolved your _md5 problem? I'm getting the same error trying to deal with Sage, and I must admit it's quite annoying. I cannot find any good solution.
-
So after an update the other day, deluge now causes my cpu usage to creep to ~67%. While it seems that a system should still be functional at 67% usage, it definitely is not. it causes everything to become unresponsive, and the only thing that **does** respond is deluge, and only if i right click on the tray icon. Oh, and this only happens when the gui is open. If deluge is minimized to the tray, this symptom doesn't happen. When i manage to kill deluge, the symptoms disappear. Deluge output as follows:
[johnny@localhost ~]$ deluge --loglevel=debug
[INFO ] 17:21:40 main:117 Deluge ui 1.1.7
[DEBUG ] 17:21:41 main:118 options: {'loglevel': 'debug', 'default_ui': None, 'args': None, 'quiet': False, 'ui': None, 'logfile': None, 'config': None}
[DEBUG ] 17:21:41 main:119 args: []
[DEBUG ] 17:21:41 main:120 ui_args: []
[INFO ] 17:21:41 main:123 Starting ui..
[DEBUG ] 17:21:41 ui:47 UI init..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'ui.conf'
[DEBUG ] 17:21:41 config:253 Config /home/johnny/.config/deluge/ui.conf loaded: {'default_ui': 'gtk'}
[INFO ] 17:21:41 ui:64 Starting GtkUI..
[DEBUG ] 17:21:41 client:113 CoreProxy init..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:41 config:253 Config /home/johnny/.config/deluge/gtkui.conf loaded: {'close_to_tray': True, 'ntf_sound_path': '/home/johnny', 'window_width': 1279, 'default_load_path': '/home/johnny/Torrents', 'window_y_pos': 40, 'ntf_email': False, 'tray_upload_speed_list': [5.0, 10.0, 30.0, 80.0, 200.0], 'show_statusbar': False, 'ntf_popup': False, 'ntf_pass': '', 'show_sidebar': False, 'autoconnect_host_uri': None, 'window_maximized': False, 'enable_system_tray': True, 'tray_download_speed_list': [5.0, 10.0, 30.0, 80.0, 300.0], 'show_connection_manager_on_start': True, 'lock_tray': False, 'ntf_sound': False, 'tray_password': '', 'focus_add_dialog': True, 'ntf_server': '', 'start_in_tray': True, 'ntf_tray_blink': True, 'check_new_releases': True, 'autoadd_queued': False, 'classic_mode': True, 'window_pane_position': 291, 'enabled_plugins': [], 'show_rate_in_title': True, 'autoadd_enable': False, 'ntf_username': '', 'interactive_add': True, 'sidebar_show_zero': False, 'window_x_pos': -1, 'window_height': 512, 'ntf_security': None, 'connection_limit_list': [50, 100, 200, 300, 500], 'sidebar_position': 0, 'show_new_releases': False, 'autoconnect': False, 'choose_directory_dialog_path': '/home/johnny', 'sidebar_show_trackers': True, 'autostart_localhost': False, 'show_toolbar': True, 'autoadd_location': '', 'config_location': '/home/johnny/.config/deluge', 'ntf_email_add': '', 'signal_port': 57126}
1.1.7
[DEBUG ] 17:21:41 gtkui:182 retcode: 0
[DEBUG ] 17:21:41 component:106 Registered QueuedTorrents with ComponentRegistry..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'gtkui.conf'
/usr/lib/python2.6/site-packages/deluge/ui/gtkui/queuedtorrents.py:60: GtkWarning: Unable to locate theme engine in module_path: "mist",
"glade/queuedtorrents.glade"))
[DEBUG ] 17:21:41 component:106 Registered IPCInterface with ComponentRegistry..
[DEBUG ] 17:21:41 component:106 Registered DbusInterface with ComponentRegistry..
[DEBUG ] 17:21:41 ipcinterface:87 Processing args from other process: []
[DEBUG ] 17:21:41 ipcinterface:90 Not connected to host.. Adding to queue.
[INFO ] 17:21:41 dbusinterface:88 Registering with DBUS..
[DEBUG ] 17:21:41 component:106 Registered Signals with ComponentRegistry..
[DEBUG ] 17:21:41 signalreceiver:56 SignalReceiver init..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:41 config:135 Setting 'signal_port' to 49978 of <type 'int'>
[DEBUG ] 17:21:41 config:278 Saving new config file /home/johnny/.config/deluge/gtkui.conf.new
[DEBUG ] 17:21:41 config:290 Backing up old config file to /home/johnny/.config/deluge/gtkui.conf~
[DEBUG ] 17:21:41 config:298 Moving new config file /home/johnny/.config/deluge/gtkui.conf.new to /home/johnny/.config/deluge/gtkui.conf..
[DEBUG ] 17:21:41 component:106 Registered MainWindow with ComponentRegistry..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'gtkui.conf'
/usr/lib/python2.6/site-packages/deluge/ui/gtkui/mainwindow.py:63: GtkWarning: gtk_toolbar_set_icon_size: assertion `icon_size != GTK_ICON_SIZE_INVALID' failed
"glade/main_window.glade"))
[DEBUG ] 17:21:41 config:212 Registering function for show_rate_in_title key..
[DEBUG ] 17:21:41 menubar:54 MenuBar init..
[DEBUG ] 17:21:41 component:106 Registered MenuBar with ComponentRegistry..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:41 component:106 Registered ToolBar with ComponentRegistry..
[DEBUG ] 17:21:41 toolbar:52 ToolBar Init..
[DEBUG ] 17:21:41 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:41 component:106 Registered TorrentView with ComponentRegistry..
[DEBUG ] 17:21:41 listview:137 ListView initialized..
[DEBUG ] 17:21:41 listview:236 Loading ListView state file: torrentview.state
[DEBUG ] 17:21:41 torrentview:130 TorrentView Init..
[DEBUG ] 17:21:42 component:106 Registered TorrentDetails with ComponentRegistry..
[DEBUG ] 17:21:42 torrentdetails:411 Loading TorrentDetails state file: tabs.state
[DEBUG ] 17:21:42 torrentdetails:70 parent: None
[DEBUG ] 17:21:42 torrentdetails:70 parent: None
[DEBUG ] 17:21:42 files_tab:254 Loading FilesTab state file: files_tab.state
[DEBUG ] 17:21:42 torrentdetails:70 parent: None
[DEBUG ] 17:21:42 peers_tab:208 Loading PeersTab state file: peers_tab.state
[DEBUG ] 17:21:42 torrentdetails:70 parent: None
[DEBUG ] 17:21:42 torrentdetails:70 parent: None
[DEBUG ] 17:21:42 component:106 Registered SideBar with ComponentRegistry..
[DEBUG ] 17:21:42 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:42 component:106 Registered FilterTreeView with ComponentRegistry..
[DEBUG ] 17:21:42 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:42 sidebar:86 add tab:filters
[DEBUG ] 17:21:42 filtertreeview:270 nothing selected
[DEBUG ] 17:21:42 component:106 Registered Preferences with ComponentRegistry..
[DEBUG ] 17:21:43 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:43 component:106 Registered SystemTray with ComponentRegistry..
[DEBUG ] 17:21:43 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:43 config:212 Registering function for enable_system_tray key..
[DEBUG ] 17:21:43 systemtray:81 Enabling the system tray icon..
[DEBUG ] 17:21:43 component:106 Registered StatusBar with ComponentRegistry..
[DEBUG ] 17:21:43 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:43 component:106 Registered AddTorrentDialog with ComponentRegistry..
[DEBUG ] 17:21:43 coreconfig:44 CoreConfig init..
[DEBUG ] 17:21:43 component:106 Registered CoreConfig with ComponentRegistry..
[DEBUG ] 17:21:43 component:106 Registered PluginManager with ComponentRegistry..
[DEBUG ] 17:21:43 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:43 pluginmanagerbase:64 Plugin manager init..
[DEBUG ] 17:21:43 configmanager:91 Getting config 'gtkui.conf'
[DEBUG ] 17:21:43 pluginmanagerbase:115 Found plugin: Blocklist 1.0
[DEBUG ] 17:21:43 pluginmanagerbase:115 Found plugin: Label 0.1
[DEBUG ] 17:21:43 component:106 Registered ConnectionManager with ComponentRegistry..
[DEBUG ] 17:21:43 configmanager:91 Getting config 'hostlist.conf.1.1'
[DEBUG ] 17:21:43 config:253 Config /home/johnny/.config/deluge/hostlist.conf.1.1 loaded: {'hosts': ['http://127.0.0.1:58846']}
[DEBUG ] 17:21:43 configmanager:91 Getting config 'gtkui.conf'
[INFO ] 17:21:43 connectionmanager:490 Starting localhost:58846 daemon..
[INFO ] 17:21:43 client:172 Setting core uri as http://localclient:[email protected]:58846
[DEBUG ] 17:21:43 client:204 Creating ServerProxy..
[DEBUG ] 17:21:43 component:129 Starting component SystemTray..
[DEBUG ] 17:21:43 component:129 Starting component Signals..
[DEBUG ] 17:21:43 component:129 Starting component PluginManager..
[DEBUG ] 17:21:43 component:129 Starting component Preferences..
[DEBUG ] 17:21:43 component:129 Starting component DbusInterface..
[DEBUG ] 17:21:43 component:129 Starting component StatusBar..
[DEBUG ] 17:21:43 component:129 Starting component AddTorrentDialog..
[DEBUG ] 17:21:43 pluginmanager:87 Core has these plugins enabled: []
[DEBUG ] 17:21:43 component:129 Starting component FilterTreeView..
[DEBUG ] 17:21:43 component:129 Starting component ConnectionManager..
[DEBUG ] 17:21:43 component:129 Starting component TorrentView..
[DEBUG ] 17:21:43 component:129 Starting component TorrentDetails..
[DEBUG ] 17:21:43 component:129 Starting component IPCInterface..
[DEBUG ] 17:21:43 component:129 Starting component CoreConfig..
[DEBUG ] 17:21:43 component:129 Starting component SideBar..
[DEBUG ] 17:21:43 component:129 Starting component QueuedTorrents..
[DEBUG ] 17:21:43 component:129 Starting component MainWindow..
[DEBUG ] 17:21:43 component:129 Starting component ToolBar..
[DEBUG ] 17:21:43 component:129 Starting component MenuBar..
[DEBUG ] 17:22:12 config:135 Setting 'window_y_pos' to 491 of <type 'int'>
[DEBUG ] 17:22:12 config:135 Setting 'window_y_pos' to 40 of <type 'int'>
[DEBUG ] 17:22:16 component:153 Pausing component TorrentView..
[DEBUG ] 17:22:16 component:153 Pausing component StatusBar..
[DEBUG ] 17:22:16 component:153 Pausing component TorrentDetails..
[DEBUG ] 17:22:24 component:163 Resuming component TorrentView..
[DEBUG ] 17:22:24 component:163 Resuming component StatusBar..
[DEBUG ] 17:22:24 component:163 Resuming component TorrentDetails..
[DEBUG ] 17:22:24 config:135 Setting 'window_x_pos' to -2 of <type 'int'>
[DEBUG ] 17:22:24 config:135 Setting 'window_y_pos' to 22 of <type 'int'>
[DEBUG ] 17:22:25 config:135 Setting 'window_x_pos' to -1 of <type 'int'>
[DEBUG ] 17:22:25 config:135 Setting 'window_y_pos' to 491 of <type 'int'>
[DEBUG ] 17:22:25 config:135 Setting 'window_y_pos' to 40 of <type 'int'>
[DEBUG ] 17:22:30 component:153 Pausing component TorrentView..
[DEBUG ] 17:22:30 component:153 Pausing component StatusBar..
[DEBUG ] 17:22:30 component:153 Pausing component TorrentDetails..
[DEBUG ] 17:22:37 systemtray:317 on_menuitem_quit_activate
[INFO ] 17:22:37 client:172 Setting core uri as None
[DEBUG ] 17:22:37 component:141 Stopping component SystemTray..
[DEBUG ] 17:22:37 component:141 Stopping component PluginManager..
[DEBUG ] 17:22:37 component:141 Stopping component Preferences..
[DEBUG ] 17:22:37 component:141 Stopping component DbusInterface..
[DEBUG ] 17:22:37 component:141 Stopping component StatusBar..
[DEBUG ] 17:22:37 component:141 Stopping component AddTorrentDialog..
[DEBUG ] 17:22:37 component:141 Stopping component FilterTreeView..
[DEBUG ] 17:22:37 filtertreeview:270 nothing selected
[DEBUG ] 17:22:37 component:141 Stopping component ConnectionManager..
[DEBUG ] 17:22:37 component:141 Stopping component TorrentView..
[DEBUG ] 17:22:37 component:141 Stopping component Signals..
[DEBUG ] 17:22:37 signalreceiver:95 Shutting down signalreceiver
[DEBUG ] 17:22:37 signalreceiver:102 Unable to deregister client from server: 'The core proxy is invalid.'
[DEBUG ] 17:22:37 signalreceiver:105 Joining listening thread..
[DEBUG ] 17:22:37 component:141 Stopping component TorrentDetails..
[DEBUG ] 17:22:37 component:141 Stopping component IPCInterface..
[DEBUG ] 17:22:37 component:141 Stopping component CoreConfig..
[DEBUG ] 17:22:37 component:141 Stopping component SideBar..
[DEBUG ] 17:22:37 component:141 Stopping component QueuedTorrents..
[DEBUG ] 17:22:37 component:141 Stopping component MainWindow..
[DEBUG ] 17:22:37 component:141 Stopping component ToolBar..
[DEBUG ] 17:22:37 component:141 Stopping component MenuBar..
[DEBUG ] 17:22:37 gtkui:241 gtkui shutting down..
[DEBUG ] 17:22:37 component:182 Shutting down component SystemTray..
[DEBUG ] 17:22:37 component:182 Shutting down component PluginManager..
[DEBUG ] 17:22:37 component:182 Shutting down component Preferences..
[DEBUG ] 17:22:37 component:182 Shutting down component DbusInterface..
[DEBUG ] 17:22:37 component:182 Shutting down component StatusBar..
[DEBUG ] 17:22:37 component:182 Shutting down component AddTorrentDialog..
[DEBUG ] 17:22:37 component:182 Shutting down component FilterTreeView..
[DEBUG ] 17:22:37 component:182 Shutting down component ConnectionManager..
[DEBUG ] 17:22:37 component:182 Shutting down component TorrentView..
[DEBUG ] 17:22:37 listview:222 Saving ListView state file: torrentview.state
[DEBUG ] 17:22:37 component:182 Shutting down component Signals..
[DEBUG ] 17:22:37 component:182 Shutting down component TorrentDetails..
[DEBUG ] 17:22:37 files_tab:240 Saving FilesTab state file: files_tab.state
[DEBUG ] 17:22:37 peers_tab:194 Saving FilesTab state file: peers_tab.state
[DEBUG ] 17:22:37 torrentdetails:397 Saving TorrentDetails state file: tabs.state
[DEBUG ] 17:22:37 component:182 Shutting down component IPCInterface..
[DEBUG ] 17:22:37 component:182 Shutting down component CoreConfig..
[DEBUG ] 17:22:37 component:182 Shutting down component SideBar..
[DEBUG ] 17:22:37 sidebar:68 hpaned.position: 0
[DEBUG ] 17:22:37 component:182 Shutting down component QueuedTorrents..
[DEBUG ] 17:22:37 component:182 Shutting down component MainWindow..
[DEBUG ] 17:22:37 component:182 Shutting down component ToolBar..
[DEBUG ] 17:22:37 component:182 Shutting down component MenuBar..
[INFO ] 17:22:37 client:172 Setting core uri as None
[johnny@localhost ~]$
Relevant packages:
pacman -Q | grep -e torrent -e deluge -e pygtk -e python -e gtk
dbus-python 0.83.0-2
deluge 1.1.7-1
gnome-python 2.26.1-1
gnome-python-extras 2.25.3-1
gstreamer0.10-python 0.10.14-1
gtk 1.2.10-8
gtk-doc 1.11-1
gtk-theme-switch2 2.0.5-1
gtk-vnc 0.3.8-1
gtk2 2.16.1-1
gtk2_prefs 0.4.1-1
gtkglext 1.2.0-2
gtkmm 2.16.0-1
gtkspell 2.0.15-1
libgtkhtml 2.11.1-2
libtorrent 0.12.4-1
libtorrent-rasterbar 0.14.2-1
pygtk 2.14.1-3
python 2.6.2-1
python-cssutils 0.9.5.1-3
python-feedparser 4.1-4
python-nose 0.10.4-3
python-notify 0.1.1-5
python-numeric 24.2-4
python-numpy 1.3.0-1
python-pigment 0.3.11-1
python-pysqlite 2.4.1-2
python-xlib 0.14-1
wxgtk 2.8.9.2-1
wxgtk-2.6 2.6.4-2
Thanks for any help.ah thanks for the heads up on the titlebar speed bug ! ! !
EDIT: Alas, that did not fix it. please let me know if you need any more debugging output. Oh, i'm running a fluxbox session with only conky and tilda running, btw.
Last edited by umpalumpa1985 (2009-04-29 00:28:39) -
[SOLVED] Eclipse broken after -Syu
Hello,
I -Syued today and can no longer run Eclipse.
This goes to console:
org.osgi.framework.BundleException: The bundle could not be resolved. Reason: Missing Constraint: Require-Bundle: org.eclipse.core.jobs; bundle-version="[3.2.0,4.0.0)"
at org.eclipse.osgi.framework.internal.core.BundleHost.startWorker(BundleHost.java:305)
at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:265)
at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:257)
at org.eclipse.equinox.internal.simpleconfigurator.ConfigApplier.startBundles(ConfigApplier.java:317)
at org.eclipse.equinox.internal.simpleconfigurator.ConfigApplier.install(ConfigApplier.java:86)
at org.eclipse.equinox.internal.simpleconfigurator.SimpleConfiguratorImpl.applyConfiguration(SimpleConfiguratorImpl.java:124)
at org.eclipse.equinox.internal.simpleconfigurator.SimpleConfiguratorImpl.applyConfiguration(SimpleConfiguratorImpl.java:138)
at org.eclipse.equinox.internal.simpleconfigurator.Activator.start(Activator.java:48)
at org.eclipse.osgi.framework.internal.core.BundleContextImpl$2.run(BundleContextImpl.java:1009)
at java.security.AccessController.doPrivileged(Native Method)
at org.eclipse.osgi.framework.internal.core.BundleContextImpl.startActivator(BundleContextImpl.java:1003)
at org.eclipse.osgi.framework.internal.core.BundleContextImpl.start(BundleContextImpl.java:984)
at org.eclipse.osgi.framework.internal.core.BundleHost.startWorker(BundleHost.java:346)
at org.eclipse.osgi.framework.internal.core.AbstractBundle.resume(AbstractBundle.java:355)
at org.eclipse.osgi.framework.internal.core.Framework.resumeBundle(Framework.java:1074)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.resumeBundles(StartLevelManager.java:616)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.incFWSL(StartLevelManager.java:508)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.doSetStartLevel(StartLevelManager.java:299)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.launch(StartLevelManager.java:247)
at org.eclipse.osgi.framework.internal.core.SystemBundle.resume(SystemBundle.java:201)
at org.eclipse.osgi.framework.internal.core.Framework.launch(Framework.java:644)
at org.eclipse.osgi.framework.internal.core.OSGi.launch(OSGi.java:51)
at org.eclipse.core.runtime.adaptor.EclipseStarter.startup(EclipseStarter.java:313)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:175)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:549)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:504)
at org.eclipse.equinox.launcher.Main.run(Main.java:1236)
I get this messagebox error:
An error has occurred. See the log file
/home/dante4d/.eclipse/org.eclipse.platform_3.4.0_1543616141/configuration/1241874268396.log.
And here are first 35 lines of 1241874268396.log logfile:
!SESSION 2009-05-09 15:01:09.967 -----------------------------------------------
eclipse.buildId=M20090211-1700
java.version=1.6.0_13
java.vendor=Sun Microsystems Inc.
BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_US
Command-line arguments: -os linux -ws gtk -arch x86
!ENTRY org.eclipse.core.runtime 4 0 2009-05-09 15:01:10.739
!MESSAGE
!STACK 0
org.osgi.framework.BundleException: The bundle could not be resolved. Reason: Missing Constraint: Require-Bundle: org.eclipse.core.jobs; bundle-version="[3.2.0,4.0.0)"
at org.eclipse.osgi.framework.internal.core.BundleHost.startWorker(BundleHost.java:305)
at org.eclipse.osgi.framework.internal.core.AbstractBundle.resume(AbstractBundle.java:355)
at org.eclipse.osgi.framework.internal.core.Framework.resumeBundle(Framework.java:1074)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.resumeBundles(StartLevelManager.java:616)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.incFWSL(StartLevelManager.java:508)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.doSetStartLevel(StartLevelManager.java:299)
at org.eclipse.osgi.framework.internal.core.StartLevelManager.dispatchEvent(StartLevelManager.java:489)
at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:211)
at org.eclipse.osgi.framework.eventmgr.EventManager$EventThread.run(EventManager.java:321)
!ENTRY org.eclipse.osgi 4 0 2009-05-09 15:01:10.746
!MESSAGE Application error
!STACK 1
java.lang.IllegalStateException: Unable to acquire application service. Ensure that the org.eclipse.core.runtime bundle is resolved and started (see config.ini).
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:74)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:386)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:549)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:504)
at org.eclipse.equinox.launcher.Main.run(Main.java:1236)
The whole logfile is here: http://pub.dante4d.cz/1241874070229.log
The mentioned config.ini file - I have two of them:
/home/dante4d/.eclipse/org.eclipse.platform_3.4.0_1543616141/configuration/config.ini
#This configuration file was written by: org.eclipse.equinox.internal.frameworkadmin.equinox.EquinoxFwConfigFileParser
#Sat Apr 04 20:03:58 CEST 2009
osgi.sharedConfiguration.area=file\:configuration/
/usr/share/eclipse/configuration/config.ini
#This configuration file was written by: org.eclipse.equinox.internal.frameworkadmin.equinox.EquinoxFwConfigFileParser
#Wed Feb 11 19:26:47 EST 2009
org.eclipse.update.reconcile=false
eclipse.p2.profile=SDKProfile
[email protected]/workspace
osgi.framework=file\:plugins/org.eclipse.osgi_3.4.3.R34x_v20081215-1030.jar
eclipse.buildId=M20090211-1700
osgi.bundles=reference\:file\:org.eclipse.equinox.simpleconfigurator_1.0.0.v20080604.jar@1\:start
org.eclipse.equinox.simpleconfigurator.configUrl=file\:org.eclipse.equinox.simpleconfigurator/bundles.info
eclipse.product=org.eclipse.sdk.ide
osgi.splashPath=platform\:/base/plugins/org.eclipse.platform
[email protected]/../p2
osgi.bundles.defaultStartLevel=4
osgi.ws=gtk
As always, I tried to do -Sf eclipse jre jdk to see, if it's not just a corrupt package installation, but it didn't help. Package versions are eclipse 3.4.2-1, jre 6u13-1, jdk 6u13-1. Maybe someone encontered this problem too? Just to check meanwhile I google for the solution...
Regards,
David
Last edited by dante4d (2009-05-09 14:03:57)Allan wrote:What did you update?
Well as I said, I -Syued. This is what got updated, I pretty much slept away on it last few days, so it's been more than a few packages (hope this is what oyu meant):
[2009-05-09 12:11] synchronizing package lists
[2009-05-09 12:11] starting full system upgrade
[2009-05-09 12:46] starting full system upgrade
[2009-05-09 13:09] upgraded kernel-headers (2.6.27.6-2 -> 2.6.29.1-1)
[2009-05-09 13:09] upgraded tzdata (2009e-1 -> 2009f-1)
[2009-05-09 13:09] Generating locales...
[2009-05-09 13:10] cs_CZ.UTF-8... done
[2009-05-09 13:10] cs_CZ.ISO-8859-2... done
[2009-05-09 13:10] en_US.UTF-8... done
[2009-05-09 13:10] en_US.ISO-8859-1... done
[2009-05-09 13:10] Generation complete.
[2009-05-09 13:10] upgraded glibc (2.9-4 -> 2.9-7)
[2009-05-09 13:10] upgraded acpid (1.0.8-1 -> 1.0.10-1)
[2009-05-09 13:10] upgraded avahi (0.6.24-3 -> 0.6.25-1)
[2009-05-09 13:10] upgraded binutils (2.19.1-1 -> 2.19.1-2)
[2009-05-09 13:10] upgraded gcc-libs (4.3.3-1 -> 4.4.0-1)
[2009-05-09 13:10] upgraded xmlrpc-c (1.06.32-2 -> 1.06.33-1)
[2009-05-09 13:10] upgraded cmake (2.6.3-1 -> 2.6.4-2)
[2009-05-09 13:10] upgraded cracklib (2.8.13-1 -> 2.8.13-2)
[2009-05-09 13:10] upgraded libtasn1 (1.8-1 -> 2.1-1)
[2009-05-09 13:10] upgraded gnutls (2.6.4-1 -> 2.6.6-1)
[2009-05-09 13:10] upgraded libpng (1.2.35-1 -> 1.2.36-1)
[2009-05-09 13:10] upgraded libcups (1.3.9-3 -> 1.3.10-2)
[2009-05-09 13:10] upgraded openssl (0.9.8k-1 -> 0.9.8k-2)
[2009-05-09 13:10] upgraded openslp (1.2.1-1 -> 1.2.1-2)
[2009-05-09 13:10] upgraded poppler (0.10.5-1 -> 0.10.6-1)
[2009-05-09 13:10] warning: /etc/cups/cupsd.conf installed as /etc/cups/cupsd.conf.pacnew
[2009-05-09 13:10] upgraded cups (1.3.9-4 -> 1.3.10-3)
[2009-05-09 13:10] upgraded dri2proto (1.99.3-1 -> 2.0-1)
[2009-05-09 13:10] upgraded e2fsprogs (1.41.4-1 -> 1.41.5-2)
[2009-05-09 13:10] upgraded libxext (1.0.5-1 -> 1.0.5-2)
[2009-05-09 13:10] upgraded libxfixes (4.0.3-1 -> 4.0.3-2)
[2009-05-09 13:10] upgraded libxcomposite (0.4.0-1 -> 0.4.0-2)
[2009-05-09 13:10] upgraded renderproto (0.9.3-1 -> 0.9.3-2)
[2009-05-09 13:10] upgraded libxrender (0.9.4-1 -> 0.9.4-2)
[2009-05-09 13:10] upgraded libxcursor (1.1.9-1 -> 1.1.9-2)
[2009-05-09 13:10] upgraded libxdamage (1.1.1-1 -> 1.1.1-2)
[2009-05-09 13:10] upgraded xineramaproto (1.1.2-1 -> 1.1.2-2)
[2009-05-09 13:10] upgraded libxinerama (1.0.3-1 -> 1.0.3-2)
[2009-05-09 13:10] upgraded freetype2 (2.3.9-1 -> 2.3.9-2)
[2009-05-09 13:10] upgraded pango (1.24.0-2 -> 1.24.1-1)
[2009-05-09 13:10] upgraded gtk2 (2.16.0-1 -> 2.16.1-1)
[2009-05-09 13:10] upgraded recordproto (1.13.2-1 -> 1.13.2-2)
[2009-05-09 13:10] upgraded libxtst (1.0.3-1 -> 1.0.3-2)
[2009-05-09 13:10] The jre package is licensed software.
[2009-05-09 13:10] You MUST read and agree to the license stored in
[2009-05-09 13:10] /opt/java/jre/LICENSE before using it.
[2009-05-09 13:10] upgraded jre (6u12-1 -> 6u13-1)
[2009-05-09 13:11] The jdk package is licensed software.
[2009-05-09 13:11] You MUST read and agree to the license stored in
[2009-05-09 13:11] /opt/java/LICENSE before using it.
[2009-05-09 13:11] upgraded jdk (6u12-1 -> 6u13-1)
[2009-05-09 13:11] upgraded libxt (1.0.5-1 -> 1.0.5-2)
[2009-05-09 13:11] upgraded nspr (4.7.3-1 -> 4.7.4-1)
[2009-05-09 13:11] upgraded sqlite3 (3.6.12-1 -> 3.6.13-1)
[2009-05-09 13:11] upgraded nss (3.12.2-1 -> 3.12.3-1)
[2009-05-09 13:11] upgraded xcb-util (0.3.3-1 -> 0.3.4-2)
[2009-05-09 13:11] upgraded startup-notification (0.9-1 -> 0.10-1)
[2009-05-09 13:11] upgraded xulrunner (1.9.0.8-1 -> 1.9.0.10-1)
[2009-05-09 13:11] upgraded eclipse (3.4.1-1 -> 3.4.2-1)
[2009-05-09 13:11] upgraded hal-info (0.20081219-1 -> 0.20090414-1)
[2009-05-09 13:11] upgraded usbutils (0.73-5 -> 0.81-1)
[2009-05-09 13:11] upgraded hal (0.5.11-7 -> 0.5.12git20090421.4fc367-2)
[2009-05-09 13:11] upgraded libxfce4util (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:11] upgraded exo (0.3.100-1 -> 0.3.101-1)
[2009-05-09 13:11] upgraded findutils (4.4.0-1 -> 4.4.1-1)
[2009-05-09 13:11] upgraded firefox (3.0.8-1 -> 3.0.10-1)
[2009-05-09 13:11] upgraded foomatic-db (4.0_20090306-1 -> 4.0_20090424-1)
[2009-05-09 13:11] upgraded ghostscript (8.64-3 -> 8.64-5)
[2009-05-09 13:11] upgraded foomatic-filters (4.0_20090315-1 -> 4.0_20090424-1)
[2009-05-09 13:11] upgraded foomatic-db-engine (4.0_20090306-1 -> 4.0_20090424-1)
[2009-05-09 13:11] upgraded foomatic-db-hpijs (20090306-1 -> 20090424-1)
[2009-05-09 13:11] upgraded fribidi (0.10.9-1 -> 0.19.2-1)
[2009-05-09 13:12] installed ppl (0.10.2-2)
[2009-05-09 13:12] installed cloog-ppl (0.15.3-1)
[2009-05-09 13:12] upgraded gcc (4.3.3-1 -> 4.4.0-1)
[2009-05-09 13:12] upgraded git (1.6.2.2-1 -> 1.6.2.4-1)
[2009-05-09 13:12] upgraded gnome-doc-utils (0.16.0-1 -> 0.16.1-1)
[2009-05-09 13:12] ==> To add the gnuplot mode in Emacs, add the content of /usr/share/emacs/site-lisp/dotemacs to your ~/.emacs file.
[2009-05-09 13:12] Updating TeX tree...
[2009-05-09 13:12] upgraded gnuplot (4.2.4-1 -> 4.2.5-1)
[2009-05-09 13:12] upgraded gperf (3.0.3-1 -> 3.0.4-1)
[2009-05-09 13:12] upgraded graphviz (2.20.3-1 -> 2.22.2-1)
[2009-05-09 13:12] upgraded gtkspell (2.0.15-1 -> 2.0.15-1.1)
[2009-05-09 13:12] upgraded hdparm (9.14-1 -> 9.15-1)
[2009-05-09 13:12] ==> Run 'hwd -u' to update xorgtable, pci-, and usb.ids.
[2009-05-09 13:12] upgraded hwd (5.4.3-1 -> 5.5-1)
[2009-05-09 13:12] upgraded sed (4.1.5-3 -> 4.2-1)
[2009-05-09 13:12] upgraded hwdetect (2009.03-1 -> 2009.04-1)
[2009-05-09 13:12] upgraded imagemagick (6.5.0.10-1 -> 6.5.1.9-1)
[2009-05-09 13:12] upgraded iptables (1.4.3.1-1 -> 1.4.3.2-1)
[2009-05-09 13:12] upgraded jfsutils (1.1.13-1 -> 1.1.14-1)
[2009-05-09 13:12] >>> Updating module dependencies. Please wait ...
[2009-05-09 13:12] >>> MKINITCPIO SETUP
[2009-05-09 13:12] >>> ----------------
[2009-05-09 13:12] >>> If you use LVM2, Encrypted root or software RAID,
[2009-05-09 13:12] >>> Ensure you enable support in /etc/mkinitcpio.conf .
[2009-05-09 13:12] >>> More information about mkinitcpio setup can be found here:
[2009-05-09 13:12] >>> http://wiki.archlinux.org/index.php/Mkinitcpio
[2009-05-09 13:12]
[2009-05-09 13:12] >>> Generating initial ramdisk, using mkinitcpio. Please wait...
[2009-05-09 13:12] ==> Building image "default"
[2009-05-09 13:12] ==> Running command: /sbin/mkinitcpio -k 2.6.29-ARCH -c /etc/mkinitcpio.conf -g /boot/kernel26.img
[2009-05-09 13:12] :: Begin dry run
[2009-05-09 13:12] :: Parsing hook [base]
[2009-05-09 13:12] :: Parsing hook [udev]
[2009-05-09 13:13] :: Parsing hook [autodetect]
[2009-05-09 13:13] :: Parsing hook [sata]
[2009-05-09 13:13] :: Parsing hook [usb]
[2009-05-09 13:13] :: Parsing hook [keymap]
[2009-05-09 13:13] :: Parsing hook [lvm2]
[2009-05-09 13:13] :: Parsing hook [resume]
[2009-05-09 13:13] :: Parsing hook [filesystems]
[2009-05-09 13:13] :: Generating module dependencies
[2009-05-09 13:13] :: Generating image '/boot/kernel26.img'...SUCCESS
[2009-05-09 13:13] ==> SUCCESS
[2009-05-09 13:13] ==> Building image "fallback"
[2009-05-09 13:13] ==> Running command: /sbin/mkinitcpio -k 2.6.29-ARCH -c /etc/mkinitcpio.conf -g /boot/kernel26-fallback.img -S autodetect
[2009-05-09 13:13] :: Begin dry run
[2009-05-09 13:13] :: Parsing hook [base]
[2009-05-09 13:13] :: Parsing hook [udev]
[2009-05-09 13:13] :: Parsing hook [sata]
[2009-05-09 13:13] :: Parsing hook [usb]
[2009-05-09 13:13] :: Parsing hook [keymap]
[2009-05-09 13:13] :: Parsing hook [lvm2]
[2009-05-09 13:13] :: Parsing hook [resume]
[2009-05-09 13:13] :: Parsing hook [filesystems]
[2009-05-09 13:13] :: Generating module dependencies
[2009-05-09 13:13] :: Generating image '/boot/kernel26-fallback.img'...SUCCESS
[2009-05-09 13:13] ==> SUCCESS
[2009-05-09 13:13] upgraded kernel26 (2.6.29.1-3 -> 2.6.29.2-1)
[2009-05-09 13:13] upgraded less (418-1 -> 429-1)
[2009-05-09 13:13] upgraded libdatrie (0.2.1-1 -> 0.2.2-1)
[2009-05-09 13:13] upgraded libgsf (1.14.11-1 -> 1.14.12-1)
[2009-05-09 13:13] upgraded libidn (1.13-1 -> 1.14-1)
[2009-05-09 13:13] upgraded libmysqlclient (5.1.33-1 -> 5.1.34-1)
[2009-05-09 13:13] upgraded libnotify (0.4.5-1 -> 0.4.5-1.1)
[2009-05-09 13:13] upgraded libpciaccess (0.10.5-1 -> 0.10.6-1)
[2009-05-09 13:13] upgraded libshout (2.2.2-2 -> 2.2.2-3)
[2009-05-09 13:13] upgraded libsmbios (2.0.2-1 -> 2.2.16-1)
[2009-05-09 13:13] upgraded libsoup (2.26.0-1 -> 2.26.1-1)
[2009-05-09 13:13] upgraded libstdc++5 (3.3.6-2 -> 3.3.6-3)
[2009-05-09 13:13] upgraded libxres (1.0.3-1 -> 1.0.3-2)
[2009-05-09 13:13] upgraded libwnck (2.26.0-1 -> 2.26.1-1)
[2009-05-09 13:13] upgraded libxdmcp (1.0.2-1 -> 1.0.2-2)
[2009-05-09 13:13] upgraded libxfce4menu (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:13] upgraded xfconf (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:13] upgraded libxfcegui4 (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:13] upgraded libxfontcache (1.0.4-1 -> 1.0.4-2)
[2009-05-09 13:13] upgraded libxkbui (1.0.2-1 -> 1.0.2-2)
[2009-05-09 13:13] installed iso-codes (3.8-1)
[2009-05-09 13:13] upgraded libxklavier (3.9-1 -> 3.9-2)
[2009-05-09 13:13] upgraded libxvmc (1.0.4-1 -> 1.0.4-2)
[2009-05-09 13:13] upgraded xf86dgaproto (2.0.3-1 -> 2.0.3-2)
[2009-05-09 13:13] upgraded libxxf86dga (1.0.2-1 -> 1.0.2-2)
[2009-05-09 13:13] upgraded xf86miscproto (0.9.2-1 -> 0.9.2-2)
[2009-05-09 13:13] upgraded libxxf86misc (1.0.1-1 -> 1.0.1-2)
[2009-05-09 13:13] upgraded logrotate (3.7.7-3 -> 3.7.8-1)
[2009-05-09 13:13] upgraded lsof (4.81-1 -> 4.82-1)
[2009-05-09 13:13] upgraded lzo (1.08-4 -> 1.08-5)
[2009-05-09 13:13] upgraded man-pages (3.20-1 -> 3.20-2)
[2009-05-09 13:13] upgraded pixman (0.14.0-1 -> 0.14.0-2)
[2009-05-09 13:13] upgraded xbitmaps (1.0.1-1 -> 1.0.1-2)
[2009-05-09 13:13] upgraded xcursor-themes (1.0.1-1 -> 1.0.1-2)
[2009-05-09 13:13] upgraded xf86-input-evdev (2.2.1-1 -> 2.2.2-1)
[2009-05-09 13:13] upgraded xorg-font-utils (7.4-1 -> 7.4-2)
[2009-05-09 13:13] upgraded xorg-fonts-alias (1.0.1-1 -> 1.0.1-2)
[2009-05-09 13:13] Regenerating font encodings... done.
[2009-05-09 13:13] upgraded xorg-fonts-encodings (1.0.2-2 -> 1.0.2-3)
[2009-05-09 13:14] Updating font cache... done.
[2009-05-09 13:14] upgraded xorg-fonts-misc (1.0.0-3 -> 1.0.0-4)
[2009-05-09 13:14] upgraded xorg-server-utils (7.4-4 -> 7.4-5)
[2009-05-09 13:14] upgraded xorg-server (1.6.0-3 -> 1.6.1-1)
[2009-05-09 13:14] upgraded nvidia-utils (180.44-1 -> 180.51-1)
[2009-05-09 13:14] upgraded mesa (7.4-1 -> 7.4.1-1)
[2009-05-09 13:14] upgraded mime-types (1.0-1 -> 1.0-2)
[2009-05-09 13:14]
[2009-05-09 13:14] ==> You may need to delete your local /home/dante4d/.mozilla/firefox/pluginreg.dat
[2009-05-09 13:14] ==> file for mozplugger to be enabled correctly after you update it.
[2009-05-09 13:14] ==> (It will get regenerated).
[2009-05-09 13:14] ==> To add more helpers, edit /etc/mozpluggerrc.
[2009-05-09 13:14] ==> The window name can be obtained using the utility xprop(1x).
[2009-05-09 13:14] ==> Type xprop WM_CLASS and click on a window.
[2009-05-09 13:14] upgraded mozplugger (1.12.0-2 -> 1.12.1-1)
[2009-05-09 13:14] In order to use the new nvidia module, exit Xserver and unload it manually.
[2009-05-09 13:14] upgraded nvidia (180.44-1 -> 180.51-1)
[2009-05-09 13:15] * relogin or source /etc/profile.d/openoffice.sh
[2009-05-09 13:15] * see http://wiki.archlinux.org/index.php/Openoffice
[2009-05-09 13:15] how to use extensions, e.g. for spell checking
[2009-05-09 13:15] see /opt/openoffice/share/extension/install what
[2009-05-09 13:15] is shipped with this package
[2009-05-09 13:15] upgraded openoffice-base (3.0.1-1 -> 3.1.0-1)
[2009-05-09 13:15] warning: /etc/ssh/ssh_config installed as /etc/ssh/ssh_config.pacnew
[2009-05-09 13:15] upgraded openssh (5.1p1-2 -> 5.2p1-1)
[2009-05-09 13:15] upgraded xfce4-panel (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:15] upgraded orage (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:15] upgraded pcre (7.8-1 -> 7.9-1)
[2009-05-09 13:15] upgraded poppler-glib (0.10.5-1 -> 0.10.6-1)
[2009-05-09 13:15] upgraded pygtk (2.14.1-3 -> 2.14.1-4)
[2009-05-09 13:15] upgraded python-nose (0.10.4-3 -> 0.11.0-1)
[2009-05-09 13:15] upgraded python-numeric (24.2-3 -> 24.2-4)
[2009-05-09 13:15] upgraded resourceproto (1.0.2-1 -> 1.0.2-2)
[2009-05-09 13:15] upgraded tdb (3.3.3-1 -> 3.3.4-1)
[2009-05-09 13:15] upgraded smbclient (3.3.3-1 -> 3.3.4-1)
[2009-05-09 13:15] upgraded samba (3.3.3-1 -> 3.3.4-1)
[2009-05-09 13:15] upgraded scrot (0.8-2 -> 0.8-3)
[2009-05-09 13:15] Fixing gshadow file ...
[2009-05-09 13:15] upgraded shadow (4.1.2.1-2 -> 4.1.3.1-1)
[2009-05-09 13:15] upgraded subversion (1.6.1-2 -> 1.6.1-4)
[2009-05-09 13:15] upgraded sudo (1.7.0-1 -> 1.7.1-1)
[2009-05-09 13:15] upgraded sysvinit (2.86-4 -> 2.86-5)
[2009-05-09 13:15] upgraded tango-icon-theme-extras (0.1.0-2 -> 0.1.0-3)
[2009-05-09 13:15] upgraded tcl (8.5.6-1 -> 8.5.7-1)
[2009-05-09 13:15] upgraded vte (0.20.0-1 -> 0.20.1-1)
[2009-05-09 13:15] upgraded terminal (0.2.10-1 -> 0.2.12-1)
[2009-05-09 13:15] upgraded texlive-bin (2008-3 -> 2008-4)
[2009-05-09 13:15] upgraded thunar (1.0.0-1 -> 1.0.1-1)
[2009-05-09 13:15] upgraded tk (8.5.6-1 -> 8.5.7-1)
[2009-05-09 13:15] upgraded trapproto (3.4.3-1 -> 3.4.3-2)
[2009-05-09 13:16] Updating font cache... done.
[2009-05-09 13:16] upgraded ttf-cheapskate (2.0-5 -> 2.0-6)
[2009-05-09 13:16] upgraded unrar (3.8.5-2 -> 3.9.1-1)
[2009-05-09 13:16] upgraded videoproto (2.2.2-1 -> 2.2.2-2)
[2009-05-09 13:16] upgraded whois (4.7.30-1 -> 4.7.33-1)
[2009-05-09 13:16] upgraded wine (1.1.18-1 -> 1.1.20-1)
[2009-05-09 13:16] upgraded xcmiscproto (1.1.2-1 -> 1.1.2-2)
[2009-05-09 13:16] upgraded xcompmgr (1.1.4-1 -> 1.1.4-2)
[2009-05-09 13:16] upgraded xf86bigfontproto (1.1.2-1 -> 1.1.2-2)
[2009-05-09 13:16] upgraded xf86driproto (2.0.4-1 -> 2.0.4-2)
[2009-05-09 13:16] upgraded xf86vidmodeproto (2.2.2-1 -> 2.2.2-2)
[2009-05-09 13:16] upgraded xfce-utils (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfce4-appfinder (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfce4-mixer (4.6.0-2 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfce4-session (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfce4-settings (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfdesktop (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfprint (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xfwm4 (4.6.0-1 -> 4.6.1-1)
[2009-05-09 13:16] upgraded xorg-apps (7.4-1 -> 7.4-2)
[2009-05-09 13:16] Updating font cache... done.
[2009-05-09 13:16] upgraded xorg-fonts-100dpi (1.0.1-1 -> 1.0.1-2)
[2009-05-09 13:16] upgraded xorg-res-utils (1.0.3-2 -> 1.0.3-3)
[2009-05-09 13:16] upgraded xorg-twm (1.0.4-2 -> 1.0.4-3)
[2009-05-09 13:16] upgraded xorg-utils (7.4-3 -> 7.4-4)
[2009-05-09 13:16] upgraded xorg-xkb-utils (7.4-1 -> 7.4-2)
[2009-05-09 13:16] upgraded xterm (243-1 -> 243-2)
[2009-05-09 13:16] upgraded zip (3.0-1 -> 3.0-1.1)
[2009-05-09 14:36] starting full system upgrade
[2009-05-09 14:37] upgraded eclipse (3.4.2-1 -> 3.4.2-1)
[2009-05-09 15:03] The jre package is licensed software.
[2009-05-09 15:03] You MUST read and agree to the license stored in
[2009-05-09 15:03] /opt/java/jre/LICENSE before using it.
[2009-05-09 15:03] upgraded jre (6u13-1 -> 6u13-1)
[2009-05-09 15:04] The jdk package is licensed software.
[2009-05-09 15:04] You MUST read and agree to the license stored in
[2009-05-09 15:04] /opt/java/LICENSE before using it.
[2009-05-09 15:04] upgraded jdk (6u13-1 -> 6u13-1)
I suppose I should clean my system up a bit looking at the amount of unnecessary packages I have . -
Pacman -Qm no longer working correctly [solved]
I can't get pacman -Qm to work right anymore, when I use it, it just displays pretty much every package I have, like so:
$ pacman -Qm
acl 2.2.39-1
alsa-lib 1.0.13-1
alsa-oss 1.0.12-1
alsa-utils 1.0.13-1
apache 2.2.4-2
apr 1.2.8-1
apr-util 1.2.8-2
aspell 0.60.5-1
asunder 0.1.0-2
aterm 1.0.0-2
atk 1.18.0-2
attr 2.4.32-2
audiofile 0.2.6-3
autoconf 2.61-1
automake 1.10-1
bash 3.2-1
bigreqsproto 1.0.2-1
bin86 0.16.17-1
binutils 2.17-2
bison 2.3-2
bzip2 1.0.4-1
cairo 1.4.2-1
cdparanoia 9.8-4
cdrdao 1.2.2-1
cdrkit 1.1.2-1
clisp 2.41-1
cmake 2.4.6-1
codecs 20061022-1
compositeproto 0.3.1-1
coreutils 6.9-1
cpio 2.7-2
cracklib 2.8.10-3
cups 1.2.10-1
curl 7.15.5-1
cvsup 16.1h-3
cyrus-sasl 2.1.22-3
cyrus-sasl-plugins 2.1.22-4
damageproto 1.1.0-1
db 4.5.20-1
dbus 1.0.2-4
dbus-glib 0.73-1
dcron 3.2-1
desktop-file-utils 0.12-1
dhcpcd 1.3.22pl4-4
dialog 1.0_20060221-1
diffutils 2.8.1-2
divx4linux 6.1.1-1
dmxproto 2.2.2-1
docbook-xml 4.1.2-2
docbook-xsl 1.71.1-2
doom3 1.3.1302-4
dosfstools 2.11-1
e2fsprogs 1.39-2
ed 0.4-1
enchant 1.3.0-1
esd 0.2.37-2
expat 2.0.0-1
faad2 2.5-2
fakeroot 1.5.10-1
fam 2.7.0-9
fbset 2.1-1
file 4.20-1
filesystem 0.8-1
findutils 4.2.30-1
fixesproto 4.0-2
flac 1.1.4-1
flex 2.5.33-1
fontcacheproto 0.1.2-1
fontconfig 2.4.2-1
fontsproto 2.0.2-1
freetype1 1.3.1-3
freetype2 2.3.1-1
fribidi 0.10.7-1
gawk 3.1.5-3
gc 6.8-1
gcc 4.1.2-3
gd 2.0.34-1
gdb 6.6-1
gdbm 1.8.3-3
gen-init-cpio 2.6.17-1
gettext 0.16.1-1
gftp 2.0.18-2
ghostscript 8.15.4-1
gimp 2.2.13-3
glib 1.2.10-6
glib2 2.12.11-1
glibc 2.5-6
glproto 1.4.8-1
gmp 4.2.1-1
gnome-icon-theme 2.18.0-1
gnutls 1.6.1-1
gpm 1.20.1-6
gpodder 0.8.0-1
grep 2.5.1a-2
groff 1.19.2-1
grub 0.97-7
gsfonts 8.11-4
gtk 1.2.10-7
gtk-engines 2.10.0-1
gtk2 2.10.11-2
gtkspell 2.0.11-2
gutenprint 5.0.0-2
gvim 7.0.219-1
gzip 1.3.9-1
heimdal 0.7.2-6
hicolor-icon-theme 0.10-1
icon-naming-utils 0.8.2-1
imagemagick 6.3.2.8-1
imlib2 1.2.2-1
initscripts 0.8-6
inputproto 1.4-1
intltool 0.35.5-1
iptables 1.3.7-2
iputils 021109-5
kbd 1.12-6
kbproto 1.0.3-1
kernel-headers 2.6.20-1
kernel26 2.6.20.4-1
kernel26emission 2.6.17.emission8-1
klibc 1.5-1
klibc-extras 2.2-2
klibc-udev 107-2
lame 3.97-1
latexmk 307a-1
lcms 1.16-1
less 394-1
lesstif 0.95.0-2
libao 0.8.6-2
libarchive 1.3.1-2
libart-lgpl 2.3.19-1
libcap 1.10-2
libcroco 0.6.1-1
libcups 1.2.10-1
libdmx 1.0.2-1
libdownload 1.1-1
libdrm 2.3.0-1
libelf 0.8.6-1
libevent 1.1a-2
libexif 0.6.13-1
libfontenc 1.0.3-1
libgcrypt 1.2.4-1
libglade 2.6.0-1
libgnomecanvas 2.14.0-1
libgnomecups 0.2.2-4
libgnomeprint 2.18.0-1
libgnomeprintui 2.18.0-1
libgpg-error 1.5-1
libgsf 1.14.3-2
libice 1.0.2-1
libid3tag 0.15.1b-2
libidl2 0.8.8-1
libjpeg 6b-4
liblbxutil 1.0.1-1
libldap 2.3.33-3
libmad 0.15.1b-2
libmng 1.0.9-1
libmp4v2 1.5.0.1-1
libmysqlclient 5.0.37-1
libogg 1.1.3-1
libpcap 0.9.5-1
libpng 1.2.16-1
librsvg 2.16.1-1
libsasl 2.1.22-3
libsm 1.0.2-1
libsndfile 1.0.17-1
libstdc++5 3.3.6-1
libtasn1 0.3.9-1
libtheora 1.0alpha7-1
libtiff 3.8.2-3
libtool 1.5.22-1
libungif 4.1.4-1
libusb 0.1.12-1
libvorbis 1.1.2-1
libwmf 0.2.8.4-4
libx11 1.1.1-3
libxau 1.0.2-1
libxaw 1.0.3-1
libxcb 1.0-2
libxcomposite 0.3.1-1
libxcursor 1.1.8-1
libxdamage 1.1-1
libxdmcp 1.0.2-1
libxext 1.0.3-1
libxfixes 4.0.3-1
libxfont 1.2.7-1
libxfontcache 1.0.3-1
libxft 2.1.11-2
libxi 1.1.0-1
libxinerama 1.0.0-1
libxkbfile 1.0.4-1
libxkbui 1.0.2-1
libxml2 2.6.27-2
libxmu 1.0.3-1
libxp 1.0.0-1
libxpm 3.5.6-1
libxrandr 1.2.1-1
libxrender 0.9.2-1
libxres 1.0.2-1
libxslt 1.1.20-2
libxss 1.1.1-1
libxt 1.0.5-1
libxtrap 1.0.0-1
libxtst 1.0.1-1
libxv 1.0.2-1
libxvmc 1.0.3-1
libxxf86dga 1.0.1-1
libxxf86misc 1.0.1-1
libxxf86vm 1.0.1-1
licenses 1.0.1-1
linkage-svn 118-1
logrotate 3.7.1-3
lshwd 1.1.3-5
lzo2 2.02-1
m4 1.4.8-1
mailx 8.1.1-3
make 3.81-1
man 1.6e-1
man-pages 2.43-1
mcpp 2.6-1
mdadm 2.6.1-1
mesa 6.5.2-1
mkinitcpio 0.5.13-1
mktemp 1.5-1
module-init-tools 3.2.2-3
mozilla-common 1.1-1
mpg321 0.2.10-2
ncurses 5.6-1
net-tools 1.60-10
nspr 4.6.6-1
nss 3.11.5-1
ntp 4.2.4-2
nvidia-emission 1.0.9629-1
opencdk 0.5.13-1
openldap 2.3.33-2
openslp 1.2.1-1
openssh 4.6p1-1
openssl 0.9.8e-1
pallavi-svn 94-1
pam 0.81-4
pango 1.16.1-2
parted 1.8.6-1
patch 2.5.4-2
pciutils 2.2.4-2
pcmciautils 014-1
pcre 7.0-1
perl 5.8.8-5
perl-xml-simple 2.16-1
perlxml 2.34-4
pida 0.4.4-2
pkgconfig 0.21-1
popt 1.7-3
portmap 5beta-9
postgresql-libs 8.2.3-1
printproto 1.0.3-1
procinfo 18-3
procps 3.2.7-1
psmisc 22.3-1
pycairo 1.2.2-2
pygobject 2.12.3-2
pygtk 2.10.4-1
python 2.5-4
python-numeric 24.2-2
randrproto 1.2.1-1
rapidsvn 0.9.4-1
rb_libtorrent 0.11-1
readline 5.2-1
recordproto 1.13.2-1
reiserfsprogs 3.6.20-1
renderproto 0.9.2-1
ruby 1.8.5_p12-2
scrnsaverproto 1.1.0-1
scrollkeeper 0.3.14-5
sdl 1.2.11-1
sed 4.1.5-1
shadow 4.0.18.1-3
slocate 3.1-2
smbclient 3.0.24-2
soundmixer 0.1-1
startup-notification 0.9-1
sudo 1.6.8-10
swiftfox-amd 2.0.0.3-1
sysfsutils 2.1.0-1
syslog-ng 2.0.0-2
sysvinit 2.86-2
tar 1.16.1-1
tcl 8.4.14-1
tcp_wrappers 7.6-6
tk 8.4.14-1
transmission-svn 1516-1
trapproto 3.4.3-1
trash 0.2-1
ttf-bitstream-vera 1.10-5
udev 107-3
unrar 3.7.3-1
unzip 5.52-2
usbutils 0.72-1
util-linux 2.12-10
videoproto 2.2.2-1
vim 7.0.219-1
vorbis-tools 1.1.1-3
weatherget 0.2-2
wget 1.10.2-2
which 2.16-1
wmctrl 1.07-1
xcb-proto 1.0-1
xcursor-themes 1.0.1-1
xdg-utils 1.0.1-1
xextproto 7.0.2-1
xf86-input-keyboard 1.1.0-1
xf86-input-mouse 1.1.1-1
xf86-video-vesa 1.2.1-2
xf86dgaproto 2.0.2-1
xf86miscproto 0.9.2-1
xf86vidmodeproto 2.2.2-1
xine-lib 1.1.4-2
xineramaproto 1.1.2-1
xkeyboard-config 0.9-1
xorg 11R7.0-1
xorg-font-utils 1.0.3-1
xorg-fonts-alias 1.0.1-1
xorg-fonts-encodings 1.0.2-1
xorg-fonts-misc 1.0.0-3
xorg-server 1.2.0-3
xorg-server-utils 1.0.3-2
xorg-utils 1.0.2-1
xorg-xauth 1.0.1-1
xorg-xinit 1.0.3-1
xorg-xkb-utils 1.0.2-1
xorg-xsm 1.0.1-2
xproto 7.0.9-2
xterm 223-1
xvidcore 1.1.2-1
zip 2.32-1
zlib 1.2.3-1
I know for a fact that all of these packages aren't foreign. Any Ideas why this is acting like this?
Edit: I suppose I should mention that It worked fine last week. I can't remember if I've used it since I upgraded to pacman 3 from testing, but I have used it with pacman 3 ( I was using the rc before it went to testing).
Last edited by barebones (2007-04-03 18:43:51)For future reference, I got this fixed. I was looking around in /var/lib/pacman and I realized that the current folder was empty. Why this happened I do not know. I used pacman to reinstall a package from current (I used bash) and when it was installed, the current directory was regenerated.
-
Conflicting Files Error /foo/bar exists in filesystem
I tried to do a full update last night and once pacman had acquired all of the files it produced some errors which can be seen below (all of the packages I upgraded can also be seen below):
Targets (353): libx11-1.1.5-2 expat-2.0.1-2 dbus-core-1.2.3-1 dbus-1.2.3-3 bluez-4.1-1 a52dec-0.7.4-4 gpm-1.20.5-2 aalib-1.4rc5-6 libpng-1.2.33-1 libjpeg-6b-5
libtiff-3.8.2-4 hal-info-0.20081022-1 pciutils-3.0.2-1 procps-3.2.7-5 pm-utils-1.2.2.1-1 bash-3.2.039-3 e2fsprogs-1.41.3-2 util-linux-ng-2.14-1
udev-130-1 hal-0.5.11-4 libdrm-2.4.1-1 openssl-0.9.8i-2 xkeyboard-config-1.3-1 libpciaccess-0.10.4-1 xorg-server-1.5.2-3 nvidia-utils-177.80-1
mesa-7.2-1 sqlite3-3.6.4-1 qt-4.4.3-1 shared-mime-info-0.51-1 akonadi-1.0.0-2 gettext-0.17-2 heimdal-1.2-2 alpine-2.00-1 alsa-lib-1.0.17a-2
dialog-1.1_20080819-1 alsa-utils-1.0.17-1 amarok-engine-xine-1.4.10-1 postgresql-libs-8.3.5-1 qt3-3.3.8-9 ruby-1.8.7_p72-2 amarok-base-1.4.10-1
apr-1.3.3-1 unixodbc-2.2.12-2 apr-util-1.3.4-1 apache-2.2.10-1 archlinux-menus-2.1-2 aspell-0.60.6-2 libbonobo-2.24.0-1 at-spi-1.24.0-2 texinfo-4.13a-1
m4-1.4.12-1 autoconf-2.63-1 avahi-0.6.23-1 binutils-2.18-9 bzip2-1.0.5-3 python-2.6-2 boost-1.36.0-2 gnome-keyring-2.24.1-1 fam-2.7.0-11 popt-1.14-1
tdb-3.2.4-1 smbclient-3.2.4-3 gnome-vfs-2.24.0-1 libgnome-2.24.1-1 libbonoboui-2.24.0-1 libgnomeui-2.24.0-1 libglade-2.6.3-1
evolution-data-server-2.24.1-1 totem-plparser-2.24.2-1 brasero-0.8.2-2 pycairo-1.6.4-2 pygobject-2.15.4-2 python-numeric-24.2-3 pygtk-2.13.0-2
gnome-menus-2.24.1-3 libxau-1.0.4-1 libgtop-2.24.0-1 bug-buddy-2.24.1-1 run-parts-2.30-1 ca-certificates-20080809-5 cairomm-1.6.4-1 cdparanoia-10.2-2
gstreamer0.10-base-plugins-0.10.21-1 librsvg-2.22.3-1 cheese-2.24.1-1 curl-7.19.0-1 conky-1.6.1-2 cpufrequtils-005-2 cracklib-2.8.13-1 libgcrypt-1.4.3-2
cryptsetup-1.0.6-2 gnome-speech-0.4.21-1 dasher-4.9.0-1 dbus-python-0.83.0-2 desktop-file-utils-0.15-1 dhcpcd-4.0.3-1 libassuan-1.0.5-1 libksba-1.0.3-1
dirmngr-1.0.2-1 jre-6u10-1 jdk-6u10-1 hunspell-1.2.6-1 xulrunner-1.9.0.3-1 eclipse-3.4.1-1 eclipse-cdt-5.0.1-1 ed-1.1-2 gnome-desktop-2.24.1-1
eel-2.24.1-1 emacs-nox-22.3-2 gnome-icon-theme-2.24.0-1 eog-2.24.1-1 libtool-2.2.6a-1 libcanberra-0.10-1 epiphany-2.24.1-2 poppler-glib-0.8.6-1
evince-2.24.1-1 evolution-webcal-2.24.0-1 libxfce4util-4.4.3-1 exo-0.3.4-3 fakeroot-1.10.1-1 file-4.26-1 file-roller-2.24.1-1 wxgtk-2.8.9-1
filezilla-3.1.2-1 firefox-3.0.3-1 flashplugin-10.0.12.36-2 fluxbox-1.1.1-1 frostwire-4.17.0-1 fuse-2.7.4-1 gcalctool-5.24.1-1 gmp-4.2.4-1.1 mpfr-2.3.2-2
gcc-4.3.2-1 gconf-editor-2.24.1-1 gksu-2.0.0-4 pam-1.0.2-2 zenity-2.24.0-1 consolekit-0.3.0-2 gdm-2.20.8-1 gtksourceview2-2.4.0-1
pygtksourceview2-2.4.0-1 gedit-2.24.0-2 ghostscript-8.63-3 babl-0.0.22-1 gegl-0.0.20-1 gimp-2.6.2-1 libsigc++2.0-2.2.3-1 glibmm-2.18.1-1 libical-0.41-1
gnokii-0.6.26-2 libgweather-2.24.1-1 libwnck-2.24.1-1 policykit-gnome-0.9.2-2 gnome-panel-2.24.1-1 gucharmap-2.24.1.1-1 libxklavier-3.7-1
libgnomekbd-2.24.0-1 gnome-applets-2.24.1-2 gnome-backgrounds-2.24.0-1 gnome-settings-daemon-2.24.0-1 metacity-2.24.0-1 sound-theme-freedesktop-0.1-1
gnome-control-center-2.24.0.1-3 rarian-0.8.1-1 gnome-doc-utils-0.14.0-1 pyorbit-2.24.0-2 gnome-python-2.22.3-3 gnome-python-desktop-2.24.0-2 guile-1.8.4-3
gnome-games-2.24.1-1 gnome-games-extra-data-2.24.0-1 gnome-mag-0.15.4-1 gnome-media-2.24.0.1-1 gnome-netstatus-2.12.2-1 dnsutils-9.5.0.P2-1
xinetd-2.3.14-3 netkit-bsd-finger-0.17-3 whois-4.7.28-2 gnome-nettool-2.22.1-1 gnome-power-manager-2.24.1-1 gnome-screensaver-2.24.0-1
gnome-session-2.24.1-1 libgdiplus-2.0-1 mono-2.0-1 gtk-sharp-2-2.12.5-1 gnome-sharp-2.24.0-1 pango-1.22.2-1 pangomm-2.14.0-1 gtkmm-2.14.1-1
gnome-system-monitor-2.24.1-1 vte-0.17.4-2 gnome-terminal-2.24.1.1-1 gtk-engines-2.16.0-1 gnome-themes-2.24.1-1 gnome-utils-2.24.1-1
gnome-volume-manager-2.24.0-1 lzma-utils-4.32.7-1 yelp-2.24.0-2 gnome2-user-docs-2.24.0-1 pinentry-0.7.5-3 gnupg2-2.0.9-1 gok-2.24.0-1 grub-0.97-13
gstreamer0.10-python-0.10.13-2 gtk-xfce-engine-2.4.3-1 libcdio-0.80-3 libgphoto2-2.4.3-1 gvfs-1.0.2-1 hdparm-8.9-1 hwdetect-0.9.1-2 ilmbase-1.0.1-1
openexr-1.6.1-1 imagemagick-6.4.5.1-1 initscripts-2008.09-2 inputproto-1.4.4-1 linux-atm-2.5.0-1 iproute-2.6.26-1 iputils-20071127-2 irssi-0.8.12-4
jack-audio-connection-kit-0.109.2-2 jfsutils-1.1.13-1 k3b-1.0.5-2 module-init-tools-3.4-1 kernel26-2.6.27.4-1 klibc-1.5.14-1 klibc-extras-2.5-1
klibc-kbd-1.15.20080312-7 klibc-module-init-tools-3.4-2 klibc-udev-130-1 libburn-0.5.2-1 libdvdcss-1.2.10-1 libepc-0.3.8-1 libgnomecups-0.2.3-3
libgnomeprint-2.18.3-3 mutagen-1.14-2 libgpod-0.6.0-3 libieee1284-0.2.11-2 libisofs-0.6.10-1 libnjb-2.2.5-4 libnova-0.12.2-1 libraw1394-1.3.0-2
libtasn1-1.5-2 libtorrent-0.11.9-2 libxfce4mcs-4.4.3-1 libxfcegui4-4.4.3-1 libzip-0.9-1 physfs-1.1.1-1 sdl-1.2.13-3 sdl_mixer-1.2.8-3 lincity-ng-1.1.2-3
links-2.2-2 lirc-utils-0.8.3-1 logrotate-3.7.7-3 madwifi-utils-0.9.4.3844-1 madwifi-0.9.4.3844-2 man-pages-3.11-1 mdadm-2.6.7-1 mlocate-0.21-1
moc-2.4.3-4 mono-addins-0.3.1-4 mousepad-0.2.14-1 mpg123-1.6.0-1 nano-2.0.9-1 nautilus-2.24.1-1 nautilus-cd-burner-2.24.0-1 neon-0.28.3-1 netcfg-2.1.2-1
netkit-ftp-0.17-6 nitrogen-1.4-1 ntfs-3g-1.5012-1 rrdtool-1.2.27-2 ntop-3.3.8-1 nvidia-177.80-2 icu-4.0-2 hsqldb-java-1.8.0.10-1 openoffice-base-3.0.0-3
openssh-5.1p1-1 opera-9.62-1 orca-2.24.1-2 pacman-3.2.1-1 pcmciautils-015-2 postgresql-8.3.5-1 procinfo-19-3 psmisc-22.6-2 python-gdata-1.2.2-2
pyxml-0.8.4-5 qimageblitz-0.0.5-1 quodlibet-2.0-3 rhythmbox-0.11.6-3 rp-pppoe-3.10-1 rtorrent-0.7.9-3 shadow-4.1.2.1-2 screen-4.0.3-6
scrnsaverproto-1.1.0-2 sdparm-1.03-1 zip-3.0-1 seahorse-2.24.1-1 sound-juicer-2.24.0-1 speex-1.2rc1-1 thunar-0.9.3-1 squeeze-0.2.3-2 strace-4.5.18-1
strigi-0.5.11.1-1 subversion-1.5.4-1 synergy-1.3.1-2 tcl-8.5.5-1 terminal-0.2.8.3-1 terminus-font-4.28-1 texlive-core-2008.11171-1
texlive-latexextra-2008.11143-1 tk-8.5.5-1 gtkhtml-3.24.1-1 gnome-desktop-sharp-2.24.0-1 tomboy-0.12.1-2 totem-2.24.3-1 tree-1.5.2.1-2 ttf-dejavu-2.26-1
tzdata-2008h-1 v86d-0.1.9-1 vi-7.2.25-1 vino-2.24.1-1 libv4l-0.5.3-1 vlc-0.9.5-3 which-2.20-1 wine-1.1.7-1 wireshark-1.0.4-1 xcb-proto-1.2-2
xdm-archlinux-0.3-2 xextproto-7.0.3-2 xf86-video-nv-2.1.12-1 xf86-video-vesa-2.0.0-2 xfce-mcs-manager-4.4.3-1 xfce-mcs-plugins-4.4.3-1 xfce-utils-4.4.3-1
xfce4-appfinder-4.4.3-1 xfce4-icon-theme-4.4.3-1 xfce4-panel-4.4.3-1 xfce4-mixer-4.4.3-2 xfce4-session-4.4.3-1 xfdesktop-4.4.3-1 xfprint-4.4.3-1
xfsprogs-2.10.1-1 xfwm4-4.4.3-1 xfwm4-themes-4.4.3-1 xine-ui-0.99.5-4 xorg-twm-1.0.4-2 xpdf-3.02_pl2-2 xscreensaver-5.07-1 xterm-235-2 xtrans-1.2.2-1
xvidcore-1.1.3-2 yakuake-2.9.4-1
An example of the messages I get is below, they are all the same and just for klibc and xulrunner. What do you recommend?
checking package integrity...
(353/353) checking for file conflicts [##########################################################################################################################################] 100%
error: could not prepare transaction
error: failed to commit transaction (conflicting files)
xulrunner: /usr/include/xulrunner-1.9 exists in filesystem
klibc: /usr/lib/klibc/include/asm/xor_64.h exists in filesystem
Errors occurred, no packages were upgraded.
Thanks in advance,
TomThe fix for klibc is to run
rm /usr/lib/klibc/include/asm
then upgrade.
I uninstalled xulrunner with
pacman -Rc xulrunner
and reinstalled firefox. It worked but I don't know if that's the best way. -
Hardening Linux for Oracle 10g
I have been working on creating a bare-bones RHEL 5 installation which will act as an Oracle 10g database server. For hardening Linux, I have restricted to a bare minimum of packages to make it more secure. This installation did not have X-Windows, Gnome/KDE and a host of other services that will not be required on Production servers. I selected only the BASE installation which was further customized to include just the following (there is scope to trim this further, so feedback is welcome):
NetworkManager
readahead
smartmontools
yum-updatesd
irqbalance
acpid
crash
cryptsetup-luks
dos2unix
dump
finger
gnugpg
ksh
libaio
logwatch
m2crypto
man-pages
mdadm
nano
numactl
openssh-clients
openssh-servers
pam_ccreds
pam_krb5
pam_passwdqc
sendmail
setuptools
stunnel
sudo
symlinks
system-config-network
tree
unix2dos
unzip
vconfig
wget
which
yum
yum-rhn-plugin
yum-security
zip
Since I do not intend to use nfs, nis, samba – associated packages were not included. Further hardening was achieved by deleting non-required services (kudzu, avahi, gpm, atd, netfs, ip6tables).
The challenge comes when I begin setting up Oracle 10g using the oracle validated rpm method. In an attempt to resolve dependencies, YUM ends up installing 70 packages that do not apparently seem to have anything to do with an RDBMS (sound libraries, Gnome, X libraries and tools etc.). For me the libraries/binaries required for linking appear to be justified but the rest appear to be installed only for the Installer.
This package addition also ends up installing gamin which provides the gam_server which has bugs in it that lead to > 90% CPU consumption.
I further tried erasing some of the packages to see if anything broke. Till now nothing is broken and the database is running fine. Till now I have removed:
gamin
gamin-python
gnome-mount
gnome-vfs2
libbonoboui
libgnome
libgnomeui
oracle-validated
yum-updatesd
esound
hicolor-icon-theme
GConf2
gnome-keyring
gtk2
libglade2
libgnomecanvas
libnotify
libwnck
notification-daemon
audiofile
cups-libs
gnome-mime-data
cairo
pango
My questions:
• How have you created a production/hardened Linux based Oracle installation?
• Can you share your experiences in hardening Linux for Oracle and deploying the Oracle 10g RDBMS without installing the scores of packages which themselves might compromise the server?
• What exactly is the dependency for the Oracle 10g RDBMS on X11, Gnome, Gamin and graphic libraries such as Cairo and Pango (to name a few)?
• Which Linux system services are really mandatory for Oracle?
• Does a non-default secure installation compromise Oracle support?
The current memory footprint for this setup (without any workload) is (figures in MB):
total used free shared buffers cached
Mem: 1010 458 552 0 19 377
-/+ buffers/cache: 61 949
Swap: 2047 0 2047
…of this 290 MB belongs to Oracle ☺
I will be working with the other route – without using the oracle-validated rpm.
Please let me have your feedback.
BR
AniruddhaHi,
I'll paste the rpm -qa of a RHEL5 server I have installed through rpm -ivh (not yum at all)
aspell-0.60.3-7.1
aspell-en-6.0-2.1
aspell-es-0.50-13.2.2
at-3.1.8-82.fc6
atk-1.12.2-1.fc6
audit-libs-1.7.13-2.el5
audit-libs-1.7.13-2.el5
audit-libs-python-1.7.13-2.el5
authconfig-5.3.21-6.el5
avahi-0.6.16-6.el5
avahi-compat-libdns_sd-0.6.16-6.el5
basesystem-8.0-5.1.1
bash-3.2-24.el5
bc-1.06-21
binutils-2.17.50.0.6-12.el5
bitmap-fonts-0.3-5.1.1
bitstream-vera-fonts-1.10-7
bzip2-1.0.3-4.el5_2
bzip2-libs-1.0.3-4.el5_2
cairo-1.2.4-5.el5
checkpolicy-1.33.1-4.el5
chkconfig-1.3.30.1-2
compat-libstdc++-33-3.2.3-61
compat-libstdc++-33-3.2.3-61
coreutils-5.97-23.el5
cpio-2.6-23.el5
cpp-4.1.2-46.el5
cracklib-2.8.9-3.3
cracklib-dicts-2.8.9-3.3
crontabs-1.10-8
cryptsetup-luks-1.0.3-5.el5
cups-1.3.7-11.el5
cups-libs-1.3.7-11.el5
cyrus-sasl-2.1.22-5.el5
cyrus-sasl-lib-2.1.22-5.el5
db4-4.3.29-10.el5
db4-4.3.29-10.el5
dbus-1.1.2-12.el5
dbus-glib-0.73-8.el5
dbus-libs-1.1.2-12.el5
dbus-python-0.70-7.el5
Deployment_Guide-en-US-5.2-11
Deployment_Guide-es-ES-5.2-11
desktop-file-utils-0.10-7
device-mapper-1.02.32-1.el5
device-mapper-1.02.32-1.el5
device-mapper-event-1.02.32-1.el5
device-mapper-multipath-0.4.7-30.el5
diffutils-2.8.1-15.2.3.el5
dmidecode-2.9-1.el5
dmraid-1.0.0.rc13-53.el5
dmraid-events-1.0.0.rc13-53.el5
e2fsprogs-1.39-23.el5
e2fsprogs-devel-1.39-23.el5
e2fsprogs-devel-1.39-23.el5
e2fsprogs-libs-1.39-23.el5
e2fsprogs-libs-1.39-23.el5
ed-0.2-39.el5_2
eject-2.1.5-4.2.el5
elfutils-0.137-3.el5
elfutils-libelf-0.137-3.el5
elfutils-libelf-devel-0.137-3.el5
elfutils-libelf-devel-static-0.137-3.el5
elfutils-libs-0.137-3.el5
ethtool-6-3.el5
expat-1.95.8-8.2.1
file-4.17-15.el5_3.1
filesystem-2.4.0-2
findutils-4.2.27-6.el5
fipscheck-1.2.0-1.el5
fipscheck-lib-1.2.0-1.el5
fontconfig-2.4.1-7.el5
freetype-2.2.1-21.el5_3
freetype-2.2.1-21.el5_3
gawk-3.1.5-14.el5
gcc-4.1.2-46.el5
gcc-c++-4.1.2-46.el5
gdbm-1.8.0-26.2.1
gettext-0.14.6-4.el5
glib2-2.12.3-4.el5_3.1
glib2-2.12.3-4.el5_3.1
glib2-devel-2.12.3-4.el5_3.1
glib2-devel-2.12.3-4.el5_3.1
glibc-2.5-42
glibc-2.5-42
glibc-common-2.5-42
glibc-devel-2.5-42
glibc-devel-2.5-42
glibc-headers-2.5-42
gnutls-1.4.1-3.el5_2.1
grep-2.5.1-55.el5
groff-1.18.1.1-11.1
grub-0.97-13.5
gtk2-2.10.4-20.el5
gzip-1.3.5-10.el5
hal-0.5.8.1-52.el5
hdparm-6.6-2
hesiod-3.1.0-8
hicolor-icon-theme-0.9-2.1
hmaccalc-0.9.6-1.el5
htmlview-4.0.0-2.el5
hwdata-0.213.16-1.el5
info-4.8-14.el5
initscripts-8.45.30-2.el5
iproute-2.6.18-10.el5
iptables-1.3.5-5.3.el5
iptables-ipv6-1.3.5-5.3.el5
iputils-20020927-46.el5
kbd-1.12-21.el5
kernel-2.6.18-164.el5
kernel-headers-2.6.18-164.el5
keyutils-libs-1.2-1.el5
kpartx-0.4.7-30.el5
krb5-libs-1.6.1-36.el5
ksh-20080202-2.el5
kudzu-1.2.57.1.21-1
less-394-6.el5
libacl-2.2.39-3.el5
libaio-0.3.106-3.2
libaio-0.3.106-3.2
libaio-devel-0.3.106-3.2
libattr-2.4.32-1.1
libcap-1.10-26
libdaemon-0.10-5.el5
libdmx-1.0.2-3.1
libdrm-2.0.2-1.1
libgcc-4.1.2-46.el5
libgcc-4.1.2-46.el5
libgcrypt-1.4.4-5.el5
libgomp-4.4.0-6.el5
libgomp-4.4.0-6.el5
libgpg-error-1.4-2
libhugetlbfs-1.3-3.el5
libhugetlbfs-1.3-3.el5
libICE-1.0.1-2.1
libICE-1.0.1-2.1
libjpeg-6b-37
libpng-1.2.10-7.1.el5_3.2
libselinux-1.33.4-5.5.el5
libselinux-1.33.4-5.5.el5
libselinux-python-1.33.4-5.5.el5
libselinux-utils-1.33.4-5.5.el5
libsemanage-1.9.1-4.4.el5
libsepol-1.15.2-2.el5
libsepol-1.15.2-2.el5
libSM-1.0.1-3.1
libSM-1.0.1-3.1
libstdc++-4.1.2-46.el5
libstdc++-4.1.2-46.el5
libstdc++-devel-4.1.2-46.el5
libstdc++-devel-4.1.2-46.el5
libsysfs-2.0.0-6
libtermcap-2.0.8-46.1
libtermcap-2.0.8-46.1
libtiff-3.8.2-7.el5_3.4
libusb-0.1.12-5.1
libuser-0.54.7-2.el5.5
libvolume_id-095-14.21.el5
libvolume_id-095-14.21.el5
libX11-1.0.3-11.el5
libX11-1.0.3-11.el5
libXau-1.0.1-3.1
libXau-1.0.1-3.1
libXau-devel-1.0.1-3.1
libXaw-1.0.2-8.1
libXcursor-1.1.7-1.1
libXdmcp-1.0.1-2.1
libXdmcp-1.0.1-2.1
libXext-1.0.1-2.1
libXext-1.0.1-2.1
libXfixes-4.0.1-2.1
libXft-2.1.10-1.1
libXi-1.0.1-3.1
libXinerama-1.0.1-2.1
libxml2-2.6.26-2.1.2.8
libxml2-python-2.6.26-2.1.2.8
libXmu-1.0.2-5
libXp-1.0.0-8.1.el5
libXp-1.0.0-8.1.el5
libXp-devel-1.0.0-8.1.el5
libXpm-3.5.5-3
libXrandr-1.1.1-3.1
libXrender-0.9.1-3.1
libXt-1.0.2-3.1.fc6
libXt-1.0.2-3.1.fc6
libXtst-1.0.1-3.1
libXtst-1.0.1-3.1
libXv-1.0.1-4.1
libXxf86dga-1.0.1-3.1
libXxf86misc-1.0.1-3.1
libXxf86vm-1.0.1-3.1
lm_sensors-2.10.7-4.el5
logrotate-3.7.4-9
lsscsi-0.17-3.el5
lvm2-2.02.46-8.el5
m4-1.4.5-3.el5.1
mailx-8.1.1-44.2.2
make-3.81-3.el5
MAKEDEV-3.23-1.2
man-1.6d-1.1
man-pages-es-1.28-10.1.1
mcstrans-0.2.11-3.el5
mesa-libGL-6.5.1-7.7.el5
microcode_ctl-1.17-1.48.el5
mingetty-1.07-5.2.2
mkinitrd-5.1.19.6-54
mkinitrd-5.1.19.6-54
mktemp-1.5-23.2.2
module-init-tools-3.3-0.pre3.1.54.el5
nano-1.3.12-1.1
nash-5.1.19.6-54
ncurses-5.5-24.20060715
net-tools-1.60-78.el5
newt-0.52.2-12.el5
nspr-4.7.4-1.el5_3.1
nspr-4.7.4-1.el5_3.1
nss-3.12.3.99.3-1.el5_3.2
nss-3.12.3.99.3-1.el5_3.2
ntp-4.2.2p1-9.el5_3.2
ocfs2-2.6.18-164.el5-1.4.2-1.el5
ocfs2console-1.4.2-1.el5
ocfs2-tools-1.4.2-1.el5
ocfs2-tools-devel-1.4.2-1.el5
openldap-2.3.43-3.el5
openssh-4.3p2-36.el5
openssh-clients-4.3p2-36.el5
openssh-server-4.3p2-36.el5
openssl-0.9.8e-12.el5
oracleasm-2.6.18-164.el5-2.0.5-1.el5
oracleasmlib-2.0.4-1.el5
oracleasm-support-2.1.3-1.el5
pam-0.99.6.2-6.el5
pango-1.14.9-6.el5
paps-0.6.6-18.el5
passwd-0.73-1
patch-2.5.4-29.2.3.el5
pax-3.4-1.2.2
pciutils-2.2.3-7.el5
pcre-6.6-2.el5_1.7
perl-5.8.8-27.el5
pkgconfig-0.21-2.el5
pm-utils-0.99.3-10.el5
policycoreutils-1.33.12-14.6.el5
popt-1.10.2.3-18.el5
prelink-0.4.0-2.el5
procmail-3.22-17.1
procps-3.2.7-11.1.el5
psmisc-22.2-7
pycairo-1.2.0-1.1
pygobject2-2.12.1-5.el5
pygtk2-2.10.1-12.el5
python-2.4.3-27.el5
python-numeric-23.7-2.2.2
readline-5.1-3.el5
readline-5.1-3.el5
redhat-logos-4.9.16-1
redhat-lsb-3.1-12.3.EL
redhat-menus-6.7.8-3.el5
redhat-release-5Server-5.4.0.3
redhat-release-notes-5Server-29
rhpl-0.194.1-1
rootfiles-8.1-1.1.1
rpm-4.4.2.3-18.el5
rpm-libs-4.4.2.3-18.el5
rsh-0.17-38.el5
rsync-2.6.8-3.1
sed-4.1.5-5.fc6
selinux-policy-2.4.6-255.el5
selinux-policy-targeted-2.4.6-255.el5
sendmail-8.13.8-2.el5
setools-3.0-3.el5
setserial-2.17-19.2.2
setup-2.5.58-7.el5
sgpio-1.2.0_10-2.el5
shadow-utils-4.0.17-14.el5
slang-2.0.6-4.el5
smartmontools-5.38-2.el5
sqlite-3.3.6-5
sysfsutils-2.0.0-6
sysklogd-1.4.1-44.el5
sysstat-7.0.2-3.el5
system-config-securitylevel-tui-1.6.29.1-2.1.el5
SysVinit-2.86-15.el5
tar-1.15.1-23.0.1.el5
tcl-8.4.13-4.el5
tcl-8.4.13-4.el5
tcp_wrappers-7.6-40.7.el5
tcp_wrappers-7.6-40.7.el5
telnet-0.17-39.el5
termcap-5.5-1.20060701.1
time-1.7-27.2.2
tmpwatch-2.9.7-1.1.el5.2
tzdata-2009k-1.el5
udev-095-14.21.el5
udftools-1.0.0b3-0.1.el5
unzip-5.52-3.el5
usermode-1.88-3.el5.2
util-linux-2.13-0.52.el5
vim-common-7.0.109-6.el5
vim-minimal-7.0.109-6.el5
vixie-cron-4.1-76.el5
vte-0.14.0-2.el5
which-2.16-7
wireless-tools-28-2.el5
xorg-x11-filesystem-7.1-2.fc6
xorg-x11-utils-7.1-2.fc6
xorg-x11-xauth-1.0.1-2.1
zabbix-agent-1.4.6-1.el5
zip-2.31-2.el5
zlib-1.2.3-3
Hope to help,
Mario Alcaide -
Has anyone managed to install gimmie?
I'm trying to build gimmie, but I don't know why it refuses to run, it sas pygtk wasn't build with python numeric suport or something like that, but I haven't been able to find anything like that in the web.
Phrodo_00 wrote:
Blaasvis wrote:make install wasn't implemented.
that's why make install didn't worked. Thank you.
I tried searching google for this gimmie you're speaking off. What is it? Sorry for the random post, but you caught my interest xD -
dpc@empire:~$ sudo pacman -S gajim
Targets: gtkspell-2.0.11-1 dnsutils-9.3.3-1 docbook-xml-4.1.2-2 libglade-2.6.0-1
python-numeric-24.2-1 pycairo-1.2.2-1 pygobject-2.12.2-1 pygtk-2.10.3-1
sqlite3-3.3.8-1 python-pysqlite-2.3.2-1 gajim-0.10.1-2
Total Package Size: 7.0 MB
Proceed with upgrade? [Y/n]
:: Retrieving packages from extra...
warning: failed to get filesize for gajim-0.10.1-2.pkg.tar.gz
failed downloading gajim-0.10.1-2.pkg.tar.gz from mirror.icis.pcz.pl: 550 Failed to open file.
gethostbyname: Success
error: cannot connect to ftp.archlinux.de
connect: Connection refused
error: cannot connect to archlinux.antesis.org
*** glibc detected *** pacman: double free or corruption (fasttop): 0x086b9580 ***
======= Backtrace: =========
/lib/libc.so.6[0xb7e36b10]
/lib/libc.so.6(__libc_free+0x89)[0xb7e381a9]
pacman[0x80604ee]
pacman[0x805b731]
pacman[0x805bdeb]
pacman[0x80523c6]
pacman[0x8055335]
/lib/libc.so.6(__libc_start_main+0xd8)[0xb7de87c8]
pacman[0x804a0a1]
======= Memory map: ========
08048000-0806b000 r-xp 00000000 08:02 531434 /usr/bin/pacman
0806b000-0806c000 rw-p 00023000 08:02 531434 /usr/bin/pacman
0806c000-086d1000 rw-p 0806c000 00:00 0 [heap]
b7c00000-b7c21000 rw-p b7c00000 00:00 0
b7c21000-b7d00000 ---p b7c21000 00:00 0
b7da6000-b7db4000 r-xp 00000000 08:02 488657 /lib/libresolv-2.5.so
b7db4000-b7db6000 rw-p 0000d000 08:02 488657 /lib/libresolv-2.5.so
b7db6000-b7db8000 rw-p b7db6000 00:00 0
b7dc6000-b7dd0000 r-xp 00000000 08:02 527152 /usr/lib/libgcc_s.so.1
b7dd0000-b7dd1000 rw-p 00009000 08:02 527152 /usr/lib/libgcc_s.so.1
b7dd1000-b7dd3000 rw-p b7dd1000 00:00 0
b7dd3000-b7ef7000 r-xp 00000000 08:02 488644 /lib/libc-2.5.so
b7ef7000-b7ef8000 r--p 00124000 08:02 488644 /lib/libc-2.5.so
b7ef8000-b7efa000 rw-p 00125000 08:02 488644 /lib/libc-2.5.so
b7efa000-b7efd000 rw-p b7efa000 00:00 0
b7efd000-b7f0e000 r-xp 00000000 08:02 529183 /usr/lib/libz.so.1.2.3
b7f0e000-b7f0f000 rw-p 00011000 08:02 529183 /usr/lib/libz.so.1.2.3
b7f16000-b7f1a000 r-xp 00000000 08:02 488658 /lib/libnss_dns-2.5.so
b7f1a000-b7f1c000 rw-p 00003000 08:02 488658 /lib/libnss_dns-2.5.so
b7f1c000-b7f24000 r-xp 00000000 08:02 488660 /lib/libnss_files-2.5.so
b7f24000-b7f26000 rw-p 00007000 08:02 488660 /lib/libnss_files-2.5.so
b7f26000-b7f2a000 rw-p b7f26000 00:00 0
b7f2a000-b7f2b000 r-xp b7f2a000 00:00 0 [vdso]
b7f2b000-b7f45000 r-xp 00000000 08:02 488643 /lib/ld-2.5.so
b7f45000-b7f46000 r--p 00019000 08:02 488643 /lib/ld-2.5.so
b7f46000-b7f47000 rw-p 0001a000 08:02 488643 /lib/ld-2.5.so
bf846000-bf85c000 rw-p bf846000 00:00 0 [stack]
Aborted
After -Sy same operation went fine. Becase gajim-0.11-1 was already available.Remove the antesis mirror - it's broken.
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