Render Work Area/Warp Stabilizer Changes Video Duration

Hi everyone,
I'm quite new to Premiere Pro and I have no doubt this question has a simple answer.
I've put in a small video, say 5 seconds into my timeline. I then for example apply the warp stabiliser effect.  I think select Sequence - Render Work Area.
But every time I do it, the full video is no longer showing. It's like it has kept the same amount of frames, but because warp stablizer (I'm assuming) has inserted frames to smooth it out, I'm only seeing a fraction of the total clip length.
So video length is still 5 seconds, but I'm now only seeing say, 60% of what was shown before.
Just for further info, I'm using a 720HD 30fps sequence, but the video in question is a 120fps from a GoPro. I wonder if that's causing the issue?
Any help would be greatly appreciated.

Hi Jonathan,
I hope you get a good answer from the gurus at ADOBE on this one. I use ProDADS Mercalli V2+ Stablizer in Cs5.5.2 with 4 cores Xeon processor, i suggest you trial it as I have had no issues with the exception of cutting the clip after stablization, do it befor hand. I was thinking of upgrading to 6.1 ?
Good luck

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