Datasources from source system replicated as 3.x instead 7.x

Hello BI Gurus,
I am Basis consultant and got stuck with an issues with incorrect datasource version replication while trying to create and connect to ECC source system.
Generally they are replicated as 7.x but this time for some strange reason it is replicated as 3.x.
We tried RSDS to do mass migration even though we would loose DTP etc but that didn't work.
We deleted and recreated the system which also replicates the datasources as 3.x.
The source ECC system is refreshed from production so does the target BI system.
This is the first time we connected specific ECC system to BI system.
BI system has multiple ECC system as source system connected to it.
Please help me asap as our development is on hold since long.

After making the copy, did you guys run BDLS to convert the former Production Logical System Name to the new name for the ECC environment and did that also to convert the former BW Logical System Name in the new ECC environment to the one it will be connected to?
If you wanted to use the same IDoc Types you were using in the original system you could use function modules RSAP_BIW_DISCONNECT and RSAP_BIW_CONNECT to disconnect the old reference and connect the new one specifying the same IDoc Type... You should do the same in BW and check table RSBASIDOC to confirm.
But yes, part of the definition of the Datasources, once you convert them is the logical system name... If it is different from the original all datasources get replicated as 3.x to maintain compatibility... At least that's what I've learnt...

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