.mov issues in FCE HD (urgent!)

I really hope someone can help me out tonight, I'm editing a video for a contest my school is entering, and the deadline is tomorrow - I'm basically letting the whole school down if I don't get this in, so yeah in a bit of a panic right now...
Here's the situation:
* I captured about 30 video clips using quicktime pro with a video camera hooked up by firewire
* transfered the resulting .mov files to an external hard drive
* connected that to a computer with FCE version 1, imported the clips to FCE, and started a bit of editing (just pulling out parts of clips and putting them in the timeline)
* switched computers, so that i'm now trying to continue the project on a computer running FCE HD
The problem is, after converting the project file to the HD format like it requested (I did save it as a copy though), I'm getting "general error" (no number after it) when I try to play some of the clips in the viewer. Bits of those clips that are already in the timeline (from when I was working on the other computer) play without audio when I render them (I did no rendering on the other computer, so all rendering is being done by FCE HD). The clips that will play in the viewer, also have audio when their excerpts are played in the timeline. It seems totally random as to which files have issues and which don't.
Please help me!!!
Thank you so much!
Claire
edit - by the way the clips that won't play audio still show the audio as unrendered (the red bar) no matter how many times I render them...also the files play fine in quicktime...

Uh oh.
Not quite fixed. Turns out I need to be able to somehow MERGE the tracks - deleting the one marked 0 just gets rid of all sound in the first part of the file (also some files have more than one "extra" track). Apperently those numbers are the timecode the audio starts, not the duration. Oops. I now have several clips without audio for the first however many minutes..... * bangs head *
I have copies of all the files, but they're at school and I can't get them until morning. But in any case I still havent solved the problem really, just gotten a clue as to what makes the bad and good ones different....
If anyone's up and reading this - thoughts?
Sorry I'm having this dialogue with myself, mods feel free to delete this.
Claire

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