Mysql instance

I have somehow locked myself out of being able to connect to
the mysql 5 server using mysql administrator.
Error: Could not connect to MySql instance at localhost.
Error: Access denied for user 'root'@localhost
I tried Navicat and that also does not let me connect or
delete or anything.
Error: Host 'localhost' is not allowed to connect to this
mysql server.
Is this something with permissions? I was using the terminal
so I may have screwed something up. How do I get the permissions or
whatever back so I can get connect with the mysql administrator?

/home/oemadmin/product/agent12c/core/12.1.0.4.0/bin/emctl: line 444: ulimit: open files: cannot modify limit: Operation not permitted
This indicates that the agent software owner is unable to set the number of file descriptors to at least 4096. Please see "File Descriptor Requirements" in Table 7-1 Prerequisites for Installing Oracle Management Agent of the following doc:
http://docs.oracle.com/cd/E24628_01/install.121/e22624/install_agent.htm#EMBSC186
Regards,
- Loc

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