Updated software - won't reboot

I logged on today and got the "Software Update" window. Figuring it was Saturday, why not update the latest stuff. Took 15 minutes or so to download, got a message that one of the files had been changed "after it left Apple" or something like that. I didn't pay too much attention as I assumed it would simply be that the software wouldn't get installed.
Clicking on "restart" as usual, the computer closed out the two apps I had open and rebooted...or at least I thought it did.
I watched the gray spinning gear under the gray apple for 10 minutes and then pushed the power button to shut down and manually restarted the machine.
Same thing now on the second attempt - still spinning and no rebooting. (I'm typing this on my laptop).
No screen of death just the spinning gear of ?????
I just shut it down again and I'll let it sit as I go out for an errand. Maybe a nap will help it.
Any suggestions would be greatly appreciated.

Letting Software Update run while you have open apps is not a good thing. Try a Safe Boot, holding down the SHIFT key during boot. This does some directory checking that may clear up the problem. If you get a useable desktop with the Safe Boot, don;t use the computer yet. Do a normal start and see if it will run.
If you get it started, go to Disk Utility and repair permissions. Some new software alters the permissions so the RP is a reasonable step.

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