Audio popping after burning blu-ray in 5.1

     Just as a disclaimer, I am fairly new to Adobe Premiere and I am running Premiere Elements 8 on a Sony Vaio with an Intel Core i5-580M processor, ATI Mobility Radeon HD 5650 GPU, 8GB DDR3-SDRAM-1066 and Windows 7 Home Premium 64bit.
     I am attempting to create blu-ray disks in full HD and 5.1 surround sound. Source video is full HD 1920x1080 with .M2TS extension. When I have Adobe Premiere Elements 8 check the properties for my videos, it says the source audio format is "48,000Hz - compressed - 6 channels" and the project audio format is "48,000Hz - 32 bit floating point - 6 channels". This is despite the fact that the source should be 5.1. However when editing videos "5.1" shows up next to audio 1 on the timeline. I read something about this issue and I assume this isn't the cause for any poor audio after a blu-ray burn.
      I create new projects using these settings:
               NTSC-AVCHD-Full HD 1080i 30 5.1 Channel
     After some quick editing I burn a blu-ray disk with the H.264 1920x1080i NTSC Dolby preset. When checking the quality of the burn the video looks great, but audio has a distinct popping or crackling occasionally that is not in the source files at all. Anyone have any ideas why a burn causes these audio blemishes to show up? I have never had any issues with 2 channel burns and I will probably just end up sticking with 2 channel audio if a solution can't be discovered. Also of note, the audio output is much lower from the burned copy than it is when played back from the source file. This will happen even when the clip volume is set to the max of +6.0dB. Thanks for any help.

Thanks.
If I play the original mts-file with Media Player Classic, the audio appears 99.9% clean. Using my headphones and 30 second test section, I could locate one barely audible "pop". PrE timeline zoom couldn't show any spikes or anything else suspicious, so I looked into this by extracting audio channels with Mediacoder to wav-file and checking how it looks at Audacity. One channel appeared to have this small step which caused the "pop". This is best described by following picture:
Then, when I export the video (or just audio to wav-file) I get dozens of these similar steps which sound like "pop". Sometimes it is just on one channel, sometimes on both channels. They appear at every 2...3 seconds or so. For comparison, this is how the "pop" looks like when exported from PrE:
Any further suggestions what might cause this increase in "popping" or how to fix it?

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